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    ARB2BP ARB2 family member B, pseudogene [ Homo sapiens (human) ]

    Gene ID: 131909, updated on 23-Nov-2023

    Summary

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    Official Symbol
    ARB2BPprovided by HGNC
    Official Full Name
    ARB2 family member B, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:34336
    See related
    AllianceGenome:HGNC:34336
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    FAM172B; FAM172BP
    Summary
    Predicted to contribute to siRNA binding activity. Predicted to be involved in heterochromatin assembly by small RNA. Predicted to be integral component of membrane. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    3q12.3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (101518867..101523887)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (104225133..104230152)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (101237711..101242731)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene SUMO specific peptidase 7 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:101185392-101185939 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:101185940-101186486 Neighboring gene basic transcription factor 3 pseudogene 16 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:101203214-101204413 Neighboring gene small nucleolar RNA U13 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20164 Neighboring gene CRISPRi-validated cis-regulatory element chr3.3097 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:101274853-101275465 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20165 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20166 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:101292235-101293180 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20169 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20170 Neighboring gene tRNA methyltransferase 10C, mitochondrial RNase P subunit Neighboring gene ribosomal protein S18 pseudogene 5 Neighboring gene PEST proteolytic signal containing nuclear protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Other Names

    • family with sequence similarity 172 member B, pseudogene

    Clone Names

    • FLJ45679

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    contributes_to siRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulatory ncRNA-mediated heterochromatin formation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_036433.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC073861

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      101518867..101523887
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      104225133..104230152
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_008062.1: Suppressed sequence

      Description
      NG_008062.1: This RefSeq was permanently suppressed because there is sufficient evidence that this locus is transcribed.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A6NC97.3 GenPept UniProtKB/Swiss-Prot:A6NC97

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
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