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    Chaf1b chromatin assembly factor 1 subunit B [ Heterocephalus glaber (naked mole-rat) ]

    Gene ID: 101725988, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Chaf1b
    Gene description
    chromatin assembly factor 1 subunit B
    Locus tag
    GW7_21316
    See related
    Ensembl:ENSHGLG00000010107
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Heterocephalus glaber
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: Un
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624745.1 (27094302..27117957, complement)

    NW_004624745.1Genomic Context describing neighboring genes Neighboring gene F-box/WD repeat-containing protein 2 pseudogene Neighboring gene claudin 14 Neighboring gene cAMP-dependent protein kinase type II-alpha regulatory subunit pseudogene Neighboring gene ubiquitin carboxyl-terminal hydrolase 1 pseudogene Neighboring gene MORC family CW-type zinc finger 3 Neighboring gene mitochondrial import inner membrane translocase subunit Tim9 pseudogene

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004624745 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Kim EB, et al. Nature, 2011 Oct 12. PMID 21993625, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA replication-dependent chromatin assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CAF-1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chromatin assembly factor 1 subunit B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference HetGla_female_1.0 Primary Assembly

    Genomic

    1. NW_004624745.1 Reference HetGla_female_1.0 Primary Assembly

      Range
      27094302..27117957 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021256283.1 → XP_021111942.1  chromatin assembly factor 1 subunit B isoform X1

      UniProtKB/TrEMBL
      G5B2U2
      Conserved Domains (3) summary
      sd00039
      Location:70 → 127
      7WD40; WD40 repeat [structural motif]
      pfam15512
      Location:388 → 591
      CAF-1_p60_C; Chromatin assembly factor complex 1 subunit p60, C-terminal
      cl25539
      Location:13 → 251
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. XM_021256284.1 → XP_021111943.1  chromatin assembly factor 1 subunit B isoform X1

      UniProtKB/TrEMBL
      G5B2U2
      Conserved Domains (3) summary
      sd00039
      Location:70 → 127
      7WD40; WD40 repeat [structural motif]
      pfam15512
      Location:388 → 591
      CAF-1_p60_C; Chromatin assembly factor complex 1 subunit p60, C-terminal
      cl25539
      Location:13 → 251
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    3. XM_021256285.1 → XP_021111944.1  chromatin assembly factor 1 subunit B isoform X2

      UniProtKB/TrEMBL
      G5B2U2
      Related
      ENSHGLP00000014148.1, ENSHGLT00000014291.1
      Conserved Domains (3) summary
      sd00039
      Location:70 → 127
      7WD40; WD40 repeat [structural motif]
      pfam15512
      Location:388 → 562
      CAF-1_p60_C; Chromatin assembly factor complex 1 subunit p60, C-terminal
      cl25539
      Location:13 → 251
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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