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    Sgms1 sphingomyelin synthase 1 [ Heterocephalus glaber (naked mole-rat) ]

    Gene ID: 101710267, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Sgms1
    Gene description
    sphingomyelin synthase 1
    Locus tag
    GW7_12759
    See related
    Ensembl:ENSHGLG00000018994
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Heterocephalus glaber
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: Un
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624791.1 (13096268..13490220, complement)

    NW_004624791.1Genomic Context describing neighboring genes Neighboring gene rRNA-processing protein UTP23 homolog pseudogene Neighboring gene spermatid perinuclear RNA-binding protein pseudogene Neighboring gene N-acylsphingosine amidohydrolase 2 Neighboring gene uncharacterized LOC110344601 Neighboring gene ran-specific GTPase-activating protein pseudogene Neighboring gene 26S proteasome non-ATPase regulatory subunit 10 pseudogene Neighboring gene histone deacetylase 2 pseudogene Neighboring gene protein DBF4 homolog A pseudogene Neighboring gene multiple inositol-polyphosphate phosphatase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004624791 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Kim EB, et al. Nature, 2011 Oct 12. PMID 21993625, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ceramide cholinephosphotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sphingomyelin synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ceramide biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sphingomyelin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphatidylcholine:ceramide cholinephosphotransferase 1
    Names
    Phosphatidylcholine:ceramide cholinephosphotransferase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference HetGla_female_1.0 Primary Assembly

    Genomic

    1. NW_004624791.1 Reference HetGla_female_1.0 Primary Assembly

      Range
      13096268..13490220 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021239160.1 → XP_021094819.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      UniProtKB/TrEMBL
      G5CAC8
      Conserved Domains (2) summary
      cd09514
      Location:1 → 72
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:275 → 348
      PAP2_C; PAP2 superfamily C-terminal

    2. XM_021239167.1 → XP_021094826.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      UniProtKB/TrEMBL
      G5CAC8
      Conserved Domains (2) summary
      cd09514
      Location:1 → 72
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:275 → 348
      PAP2_C; PAP2 superfamily C-terminal

    3. XM_021239158.1 → XP_021094817.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      UniProtKB/TrEMBL
      G5CAC8
      Conserved Domains (2) summary
      cd09514
      Location:1 → 72
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:275 → 348
      PAP2_C; PAP2 superfamily C-terminal

    4. XM_021239157.1 → XP_021094816.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      UniProtKB/TrEMBL
      G5CAC8
      Conserved Domains (2) summary
      cd09514
      Location:1 → 72
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:275 → 348
      PAP2_C; PAP2 superfamily C-terminal

    5. XM_021239161.1 → XP_021094820.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      UniProtKB/TrEMBL
      G5CAC8
      Conserved Domains (2) summary
      cd09514
      Location:1 → 72
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:275 → 348
      PAP2_C; PAP2 superfamily C-terminal

    6. XM_021239166.1 → XP_021094825.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      UniProtKB/TrEMBL
      G5CAC8
      Conserved Domains (2) summary
      cd09514
      Location:1 → 72
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:275 → 348
      PAP2_C; PAP2 superfamily C-terminal

    7. XM_021239165.1 → XP_021094824.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      UniProtKB/TrEMBL
      G5CAC8
      Conserved Domains (2) summary
      cd09514
      Location:1 → 72
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:275 → 348
      PAP2_C; PAP2 superfamily C-terminal

    8. XM_021239156.1 → XP_021094815.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      UniProtKB/TrEMBL
      G5CAC8
      Conserved Domains (2) summary
      cd09514
      Location:1 → 72
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:275 → 348
      PAP2_C; PAP2 superfamily C-terminal

    9. XM_021239164.1 → XP_021094823.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      UniProtKB/TrEMBL
      G5CAC8
      Conserved Domains (2) summary
      cd09514
      Location:1 → 72
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:275 → 348
      PAP2_C; PAP2 superfamily C-terminal

    10. XM_021239162.1 → XP_021094821.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      UniProtKB/TrEMBL
      G5CAC8
      Conserved Domains (2) summary
      cd09514
      Location:1 → 72
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:275 → 348
      PAP2_C; PAP2 superfamily C-terminal

    11. XM_021239163.1 → XP_021094822.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      UniProtKB/TrEMBL
      G5CAC8
      Conserved Domains (2) summary
      cd09514
      Location:1 → 72
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:275 → 348
      PAP2_C; PAP2 superfamily C-terminal

    12. XM_021239159.1 → XP_021094818.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      UniProtKB/TrEMBL
      G5CAC8
      Conserved Domains (2) summary
      cd09514
      Location:1 → 72
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:275 → 348
      PAP2_C; PAP2 superfamily C-terminal

    13. XM_013077204.2 → XP_012932658.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      See identical proteins and their annotated locations for XP_012932658.1

      UniProtKB/TrEMBL
      G5CAC8
      Conserved Domains (2) summary
      cd09514
      Location:1 → 72
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:275 → 348
      PAP2_C; PAP2 superfamily C-terminal

    14. XM_004858333.3 → XP_004858390.1  phosphatidylcholine:ceramide cholinephosphotransferase 1

      See identical proteins and their annotated locations for XP_004858390.1

      UniProtKB/TrEMBL
      G5CAC8
      Related
      ENSHGLP00000026699.1, ENSHGLT00000026936.1
      Conserved Domains (2) summary
      cd09514
      Location:1 → 72
      SAM_SGMS1; SAM domain of sphingomyelin synthase
      pfam14360
      Location:275 → 348
      PAP2_C; PAP2 superfamily C-terminal
    Nucleotide Protein
    Heading Accession and Version

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