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    Cbx1 chromobox 1 [ Heterocephalus glaber (naked mole-rat) ]

    Gene ID: 101706928, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Cbx1
    Gene description
    chromobox 1
    Locus tag
    GW7_00440
    See related
    Ensembl:ENSHGLG00000013574
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Heterocephalus glaber
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624795.1 (4667765..4689881, complement)

    NW_004624795.1Genomic Context describing neighboring genes Neighboring gene COPI coat complex subunit zeta 2 Neighboring gene NFE2 like bZIP transcription factor 1 Neighboring gene uncharacterized LOC110344859 Neighboring gene sorting nexin 11

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004624795 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Kim EB, et al. Nature, 2011 Oct 12. PMID 21993625, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables methylated histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of pericentric heterochromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chromobox protein homolog 1
    Names
    Chromobox protein-like protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference HetGla_female_1.0 Primary Assembly

    Genomic

    1. NW_004624795.1 Reference HetGla_female_1.0 Primary Assembly

      Range
      4667765..4689881 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004859596.2 → XP_004859653.1  chromobox protein homolog 1

      See identical proteins and their annotated locations for XP_004859653.1

      UniProtKB/TrEMBL
      G5BY16
      Related
      ENSHGLP00000018928.1, ENSHGLT00000019117.1
      Conserved Domains (2) summary
      pfam00385
      Location:27 → 70
      Chromo; Chromo (CHRromatin Organization MOdifier) domain
      pfam01393
      Location:118 → 169
      Chromo_shadow; Chromo shadow domain
    Nucleotide Protein
    Heading Accession and Version

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