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    DDX39B DExD-box helicase 39B [ Ovis aries (sheep) ]

    Gene ID: 101101929, updated on 3-Apr-2024

    Summary

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    Gene symbol
    DDX39B
    Gene description
    DExD-box helicase 39B
    See related
    EnsemblRapid:ENSOARG00020016418
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ovis aries
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 20
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2023_10 current ARS-UI_Ramb_v3.0 (GCF_016772045.2) 20 NC_056073.1 (26829893..26840877)

    Chromosome 20 - NC_056073.1Genomic Context describing neighboring genes Neighboring gene NFKB inhibitor like 1 Neighboring gene small nucleolar RNA SNORD83 Neighboring gene ATPase H+ transporting V1 subunit G2 Neighboring gene small nucleolar RNA SNORD83 Neighboring gene mitochondrial coiled-coil domain 1 Neighboring gene BOLA class I histocompatibility antigen, alpha chain BL3-7-like Neighboring gene tetraspanin-3-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_056073.1 Chromosome 20 Reference ARS-UI_Ramb_v3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    spliceosome RNA helicase DDX39B
    Names
    DEAD-box helicase 39B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_016772045.2-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UI_Ramb_v3.0 Primary Assembly

    Genomic

    1. NC_056073.1 Reference ARS-UI_Ramb_v3.0 Primary Assembly

      Range
      26829893..26840877
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027958858.3 → XP_027814659.1  spliceosome RNA helicase DDX39B

      UniProtKB/TrEMBL
      A0A835ZP30, W5PG71
      Related
      ENSOARP00020020927.1, ENSOART00020025217.2
      Conserved Domains (2) summary
      cd18787
      Location:262 → 391
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd17950
      Location:44 → 251
      DEADc_DDX39; DEAD-box helicase domain of DEAD box protein 39

    2. XM_042237320.2 → XP_042093254.1  spliceosome RNA helicase DDX39B

      UniProtKB/TrEMBL
      A0A835ZP30, W5PG71
      Conserved Domains (2) summary
      cd18787
      Location:262 → 391
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd17950
      Location:44 → 251
      DEADc_DDX39; DEAD-box helicase domain of DEAD box protein 39

    3. XM_004018965.5 → XP_004019014.1  spliceosome RNA helicase DDX39B

      See identical proteins and their annotated locations for XP_004019014.1

      UniProtKB/TrEMBL
      A0A835ZP30, W5PG71
      Conserved Domains (2) summary
      cd18787
      Location:262 → 391
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd17950
      Location:44 → 251
      DEADc_DDX39; DEAD-box helicase domain of DEAD box protein 39

    4. XM_060403264.1 → XP_060259247.1  spliceosome RNA helicase DDX39B

      UniProtKB/TrEMBL
      A0A835ZP30

    5. XM_042237319.2 → XP_042093253.1  spliceosome RNA helicase DDX39B

      UniProtKB/TrEMBL
      A0A835ZP30, W5PG71
      Conserved Domains (2) summary
      cd18787
      Location:262 → 391
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cd17950
      Location:44 → 251
      DEADc_DDX39; DEAD-box helicase domain of DEAD box protein 39
    Nucleotide Protein Strain
    Heading Accession and Version

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