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    ZKSCAN1 zinc finger with KRAB and SCAN domains 1 [ Felis catus (domestic cat) ]

    Gene ID: 101097939, updated on 8-Mar-2024

    Summary

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    Gene symbol
    ZKSCAN1
    Gene description
    zinc finger with KRAB and SCAN domains 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Felis catus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis
    Also known as
    ZSCAN21
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: E3
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    105 current F.catus_Fca126_mat1.0 (GCF_018350175.1) E3 NC_058383.1 (7190973..7257323)
    104 previous assembly Felis_catus_9.0 (GCF_000181335.3) E3 NC_018738.3 (7254004..7322324)

    Chromosome E3 - NC_058383.1Genomic Context describing neighboring genes Neighboring gene alpha-2-glycoprotein 1, zinc-binding Neighboring gene uncharacterized LOC109491390 Neighboring gene U6 spliceosomal RNA Neighboring gene COP9 signalosome subunit 6 Neighboring gene minichromosome maintenance complex component 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequencing and comparative genomic analysis of 1227 Felis catus cDNA sequences enriched for developmental, clinical and nutritional phenotypes. Irizarry KJ, et al. BMC Genomics, 2012 Jan 18. PMID 22257742, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in central nervous system development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein with KRAB and SCAN domains 1
    Names
    putative zinc finger protein 286B
    zinc finger and SCAN domain containing 21

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Felis catus Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference F.catus_Fca126_mat1.0 Primary Assembly

    Genomic

    1. NC_058383.1 Reference F.catus_Fca126_mat1.0 Primary Assembly

      Range
      7190973..7257323
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_045048277.1 → XP_044904212.1  zinc finger protein with KRAB and SCAN domains 1

      Conserved Domains (5) summary
      smart00431
      Location:632 → 743
      SCAN; leucine rich region
      smart00349
      Location:1170 → 1215
      KRAB; krueppel associated box
      COG5048
      Location:1287 → 1533
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:1405 → 1425
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl02581
      Location:227 → 269
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    Nucleotide Protein
    Heading Accession and Version

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