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    SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 [ Felis catus (domestic cat) ]

    Gene ID: 101089400, updated on 8-Mar-2024

    Summary

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    Official Symbol
    SMARCB1
    Official Full Name
    SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
    Primary source
    VGNC:VGNC:65468
    See related
    EnsemblRapid:ENSFCTG00005030415
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Felis catus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: D3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    105 current F.catus_Fca126_mat1.0 (GCF_018350175.1) D3 NC_058379.1 (29831147..29865249)
    104 previous assembly Felis_catus_9.0 (GCF_000181335.3) D3 NC_018734.3 (30602976..30639882)

    Chromosome D3 - NC_058379.1Genomic Context describing neighboring genes Neighboring gene matrix metallopeptidase 11 Neighboring gene uncharacterized LOC123381097 Neighboring gene derlin 3 Neighboring gene solute carrier family 2 member 11 Neighboring gene uncharacterized LOC109493307

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear chromosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Felis catus Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference F.catus_Fca126_mat1.0 Primary Assembly

    Genomic

    1. NC_058379.1 Reference F.catus_Fca126_mat1.0 Primary Assembly

      Range
      29831147..29865249
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003994981.6 → XP_003995030.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1

      See identical proteins and their annotated locations for XP_003995030.1

      UniProtKB/TrEMBL
      A0A337SEA8
      Related
      ENSFCTP00005057953.1, ENSFCTT00005084787.1
      Conserved Domains (2) summary
      pfam04855
      Location:181 → 363
      SNF5; SNF5 / SMARCB1 / INI1
      cd21086
      Location:9 → 107
      WH_NTD_SMARCB1; N-terminal winged helix DNA-binding domain found in SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 (SMARCB1) and similar proteins

    2. XM_003994980.6 → XP_003995029.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X2

      See identical proteins and their annotated locations for XP_003995029.1

      UniProtKB/TrEMBL
      A0A337SEA8
      Related
      ENSFCTP00005057989.1, ENSFCTT00005084868.1
      Conserved Domains (2) summary
      pfam04855
      Location:172 → 354
      SNF5; SNF5 / SMARCB1 / INI1
      cd21086
      Location:9 → 98
      WH_NTD_SMARCB1; N-terminal winged helix DNA-binding domain found in SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 (SMARCB1) and similar proteins

    3. XM_023241717.2 → XP_023097485.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X3

      UniProtKB/TrEMBL
      A0A337SEA8
      Conserved Domains (1) summary
      pfam04855
      Location:144 → 326
      SNF5; SNF5 / SMARCB1 / INI1

    4. XM_045041112.1 → XP_044897047.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X4

      UniProtKB/TrEMBL
      A0A337SEA8, A0A5F5Y5Q2
      Related
      ENSFCTP00005058003.1, ENSFCTT00005084896.1
      Conserved Domains (2) summary
      pfam04855
      Location:135 → 317
      SNF5; SNF5 / SMARCB1 / INI1
      cd21086
      Location:1 → 61
      WH_NTD_SMARCB1; N-terminal winged helix DNA-binding domain found in SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 (SMARCB1) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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