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    TARBP1 TAR (HIV-1) RNA binding protein 1 [ Felis catus (domestic cat) ]

    Gene ID: 101087009, updated on 8-Mar-2024

    Summary

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    Gene symbol
    TARBP1
    Gene description
    TAR (HIV-1) RNA binding protein 1
    See related
    EnsemblRapid:ENSFCTG00005016965
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Felis catus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: D2
    Exon count:
    34
    Annotation release Status Assembly Chr Location
    105 current F.catus_Fca126_mat1.0 (GCF_018350175.1) D2 NC_058378.1 (14180495..14269303)
    104 previous assembly Felis_catus_9.0 (GCF_000181335.3) D2 NC_018733.3 (14408480..14498998)

    Chromosome D2 - NC_058378.1Genomic Context describing neighboring genes Neighboring gene transfer RNA valine (anticodon UAC) Neighboring gene uncharacterized LOC102902472 Neighboring gene uncharacterized LOC102902652 Neighboring gene cytochrome c oxidase assembly factor 6 homolog Neighboring gene uncharacterized LOC102899201 Neighboring gene ADP/ATP translocase 2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tRNA (guanine) methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable methyltransferase TARBP1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Felis catus Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference F.catus_Fca126_mat1.0 Primary Assembly

    Genomic

    1. NC_058378.1 Reference F.catus_Fca126_mat1.0 Primary Assembly

      Range
      14180495..14269303
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_045039927.1 → XP_044895862.1  probable methyltransferase TARBP1 isoform X2

      UniProtKB/TrEMBL
      A0A5F5XY82
      Conserved Domains (1) summary
      cd18091
      Location:1477 → 1621
      SpoU-like_TRM3-like; SAM-dependent tRNA methylase related to TRM3

    2. XM_045039929.1 → XP_044895864.1  probable methyltransferase TARBP1 isoform X5

      UniProtKB/TrEMBL
      A0A5F5XY82
      Related
      ENSFCTP00005036185.1, ENSFCTT00005049750.1
      Conserved Domains (1) summary
      cd18091
      Location:1378 → 1522
      SpoU-like_TRM3-like; SAM-dependent tRNA methylase related to TRM3

    3. XM_045039926.1 → XP_044895861.1  probable methyltransferase TARBP1 isoform X1

      UniProtKB/TrEMBL
      A0A5F5XY82
      Conserved Domains (1) summary
      cd18091
      Location:1478 → 1622
      SpoU-like_TRM3-like; SAM-dependent tRNA methylase related to TRM3

    4. XM_045039928.1 → XP_044895863.1  probable methyltransferase TARBP1 isoform X4

      UniProtKB/TrEMBL
      A0A5F5XY82
      Conserved Domains (1) summary
      cd18091
      Location:1436 → 1580
      SpoU-like_TRM3-like; SAM-dependent tRNA methylase related to TRM3

    5. XM_023240395.2 → XP_023096163.2  probable methyltransferase TARBP1 isoform X3

      UniProtKB/TrEMBL
      A0A5F5XY82
      Related
      ENSFCTP00005035944.1, ENSFCTT00005049480.1
      Conserved Domains (1) summary
      cd18091
      Location:1459 → 1603
      SpoU-like_TRM3-like; SAM-dependent tRNA methylase related to TRM3

    6. XM_045039930.1 → XP_044895865.1  probable methyltransferase TARBP1 isoform X6

      Conserved Domains (1) summary
      cd18091
      Location:1140 → 1284
      SpoU-like_TRM3-like; SAM-dependent tRNA methylase related to TRM3

    RNA

    1. XR_006586895.1 RNA Sequence

    2. XR_006586894.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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