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    RARA retinoic acid receptor alpha [ Felis catus (domestic cat) ]

    Gene ID: 101083048, updated on 8-Mar-2024

    Summary

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    Official Symbol
    RARA
    Official Full Name
    retinoic acid receptor alpha
    Primary source
    VGNC:VGNC:69240
    See related
    EnsemblRapid:ENSFCTG00005022935
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Felis catus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: E1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    105 current F.catus_Fca126_mat1.0 (GCF_018350175.1) E1 NC_058381.1 (39177842..39199974)
    104 previous assembly Felis_catus_9.0 (GCF_000181335.3) E1 NC_018736.3 (41277532..41300484)

    Chromosome E1 - NC_058381.1Genomic Context describing neighboring genes Neighboring gene WAS/WASL interacting protein family member 2 Neighboring gene uncharacterized LOC109494360 Neighboring gene cell division cycle 6 Neighboring gene uncharacterized LOC123381852 Neighboring gene gap junction protein delta 3 Neighboring gene DNA topoisomerase II alpha

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear glucocorticoid receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to corticotropin-releasing hormone stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retinoic acid receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    retinoic acid receptor alpha

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Felis catus Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference F.catus_Fca126_mat1.0 Primary Assembly

    Genomic

    1. NC_058381.1 Reference F.catus_Fca126_mat1.0 Primary Assembly

      Range
      39177842..39199974
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_019817836.3 → XP_019673395.1  retinoic acid receptor alpha isoform X1

      UniProtKB/TrEMBL
      A0A2I2USN5
      Conserved Domains (2) summary
      cd06937
      Location:186 → 416
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:82 → 166
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    2. XM_045044213.1 → XP_044900148.1  retinoic acid receptor alpha isoform X7

      Conserved Domains (2) summary
      cd06937
      Location:67 → 297
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cl02596
      Location:1 → 44
      NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers

    3. XM_003996829.6 → XP_003996878.1  retinoic acid receptor alpha isoform X2

      UniProtKB/TrEMBL
      M3WWH2
      Related
      ENSFCTP00005047421.1, ENSFCTT00005065532.1
      Conserved Domains (2) summary
      cd06937
      Location:183 → 413
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:79 → 163
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    4. XM_019817838.3 → XP_019673397.1  retinoic acid receptor alpha isoform X4

      Conserved Domains (2) summary
      cd06937
      Location:133 → 363
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:29 → 113
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    5. XM_006940327.5 → XP_006940389.2  retinoic acid receptor alpha isoform X3

      Conserved Domains (2) summary
      cd06937
      Location:171 → 401
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cd06964
      Location:67 → 151
      NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

    6. XM_045044212.1 → XP_044900147.1  retinoic acid receptor alpha isoform X6

      Conserved Domains (2) summary
      cd06937
      Location:97 → 327
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
      cl02596
      Location:21 → 77
      NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers

    7. XM_045044211.1 → XP_044900146.1  retinoic acid receptor alpha isoform X5

      Conserved Domains (1) summary
      cd06937
      Location:107 → 337
      NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    Nucleotide Protein
    Heading Accession and Version

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