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    Hapln1 hyaluronan and proteoglycan link protein 1 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100729224, updated on 3-Apr-2024

    Summary

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    Gene symbol
    Hapln1
    Gene description
    hyaluronan and proteoglycan link protein 1
    See related
    Ensembl:ENSCPOG00000037148
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Hapln1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947485.1 (120536580..120603056, complement)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176418.1 (20444507..20510820)

    NW_026947485.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134475275 Neighboring gene X-ray repair cross complementing 4 Neighboring gene versican Neighboring gene uncharacterized LOC134472879 Neighboring gene EGF like repeats and discoidin domains 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hyaluronic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in central nervous system development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glial cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of neuroblast proliferation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in skeletal system development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in perineuronal net IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hyaluronan and proteoglycan link protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947485.1 Reference mCavPor4.1

      Range
      120536580..120603056 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003479471.5 → XP_003479519.2  hyaluronan and proteoglycan link protein 1 isoform X2

      Conserved Domains (4) summary
      cd05877
      Location:52 → 159
      Ig_LP_like; Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)
      smart00410
      Location:53 → 153
      IG_like; Immunoglobulin like
      cd03518
      Location:158 → 252
      Link_domain_HAPLN_module_1; Link_domain_HAPLN_module_1; this link domain is found in the first link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding ...
      cd03519
      Location:259 → 349
      Link_domain_HAPLN_module_2; Link_domain_HAPLN_module_2; this link domain is found in the second link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a ...

    2. XM_013143671.3 → XP_012999125.1  hyaluronan and proteoglycan link protein 1 isoform X1

      See identical proteins and their annotated locations for XP_012999125.1

      UniProtKB/TrEMBL
      A0A286Y2D1
      Related
      ENSCPOP00000031989.1
      Conserved Domains (4) summary
      cd05877
      Location:53 → 160
      Ig_LP_like; Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)
      smart00410
      Location:54 → 154
      IG_like; Immunoglobulin like
      cd03518
      Location:159 → 253
      Link_domain_HAPLN_module_1; Link_domain_HAPLN_module_1; this link domain is found in the first link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding ...
      cd03519
      Location:260 → 350
      Link_domain_HAPLN_module_2; Link_domain_HAPLN_module_2; this link domain is found in the second link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a ...

    3. XM_063245303.1 → XP_063101373.1  hyaluronan and proteoglycan link protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A286Y2D1
    Nucleotide Protein
    Heading Accession and Version

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