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    Cbx1 chromobox 1 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100716439, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Cbx1
    Gene description
    chromobox 1
    See related
    Ensembl:ENSCPOG00000034435
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947489.1 (91098500..91114089)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176366.1 (9022749..9038592)

    NW_026947489.1Genomic Context describing neighboring genes Neighboring gene src kinase associated phosphoprotein 1 Neighboring gene pyridoxamine 5'-phosphate oxidase Neighboring gene uncharacterized LOC134476544 Neighboring gene sorting nexin 11 Neighboring gene NFE2 like bZIP transcription factor 1 Neighboring gene COPI coat complex subunit zeta 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables methylated histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of pericentric heterochromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chromobox protein homolog 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947489.1 Reference mCavPor4.1

      Range
      91098500..91114089
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003466892.5 → XP_003466940.1  chromobox protein homolog 1

      UniProtKB/TrEMBL
      A0A286XV31
      Related
      ENSCPOP00000029396.1
      Conserved Domains (2) summary
      cd18650
      Location:20 → 69
      CD_HP1beta_Cbx1; chromodomain of heterochromatin protein 1 homolog beta
      cl28914
      Location:112 → 169
      CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains
    Nucleotide Protein
    Heading Accession and Version

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