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    Prpf8 pre-mRNA processing factor 8 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100712742, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Prpf8
    Gene description
    pre-mRNA processing factor 8
    See related
    Ensembl:ENSCPOG00000010379
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Prpf8 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    43
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947489.1 (77078823..77113175)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176387.1 (20737023..20771357)

    NW_026947489.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134476500 Neighboring gene WD repeat domain 81 Neighboring gene TLC domain containing 2 Neighboring gene Rab interacting lysosomal protein Neighboring gene scavenger receptor class F member 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables U1 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables U2 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables U5 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables U6 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metallopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pre-mRNA intronic binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spliceosomal tri-snRNP complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U5 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pre-mRNA-processing-splicing factor 8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947489.1 Reference mCavPor4.1

      Range
      77078823..77113175
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005003549.4 → XP_005003606.1  pre-mRNA-processing-splicing factor 8

      See identical proteins and their annotated locations for XP_005003606.1

      UniProtKB/TrEMBL
      H0VGR9
      Related
      ENSCPOP00000009323.2
      Conserved Domains (1) summary
      COG5178
      Location:1 → 2335
      PRP8; U5 snRNP spliceosome subunit [RNA processing and modification]

    2. XM_003469679.5 → XP_003469727.1  pre-mRNA-processing-splicing factor 8

      See identical proteins and their annotated locations for XP_003469727.1

      UniProtKB/TrEMBL
      H0VGR9
      Conserved Domains (1) summary
      COG5178
      Location:1 → 2335
      PRP8; U5 snRNP spliceosome subunit [RNA processing and modification]
    Nucleotide Protein
    Heading Accession and Version

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