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    CSNK1A1P3 casein kinase 1 alpha 1 pseudogene 3 [ Homo sapiens (human) ]

    Gene ID: 100526776, updated on 10-Oct-2023

    Summary

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    Official Symbol
    CSNK1A1P3provided by HGNC
    Official Full Name
    casein kinase 1 alpha 1 pseudogene 3provided by HGNC
    Primary source
    HGNC:HGNC:38669
    See related
    AllianceGenome:HGNC:38669
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    Location:
    5q15
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (98833380..98833908)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (99336669..99337197)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (98169084..98169612)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene DEAD-box helicase 18 pseudogene 4 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:98102871-98103612 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:98103613-98104353 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:98106065-98106565 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22835 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:98109729-98110228 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22836 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:98114818-98116017 Neighboring gene RGMB antisense RNA 1 Neighboring gene repulsive guidance molecule BMP co-receptor b Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:98175311-98175811 Neighboring gene uncharacterized LOC105379099 Neighboring gene chromodomain helicase DNA binding protein 1 Neighboring gene RNA, U6 small nuclear 402, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_027923.2 

      Range
      101..629
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      98833380..98833908
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      99336669..99337197
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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