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    TRMT1 tRNA methyltransferase 1 [ Equus caballus (horse) ]

    Gene ID: 100146178, updated on 8-Mar-2024

    Summary

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    Official Symbol
    TRMT1provided by VGNC
    Official Full Name
    tRNA methyltransferase 1provided by VGNC
    Primary source
    VGNC:VGNC:58263
    See related
    Ensembl:ENSECAG00000016149
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    103 current EquCab3.0 (GCF_002863925.1) 7 NC_009150.3 (46645562..46652933)
    102 previous assembly EquCab2.0 (GCF_000002305.2) 7 NC_009150.2 (45345682..45351906)

    Chromosome 7 - NC_009150.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111774277 Neighboring gene immediate early response 2 Neighboring gene syntaxin 10 Neighboring gene nucleus accumbens associated 1 Neighboring gene LYL1 basic helix-loop-helix family member Neighboring gene nuclear factor I X

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA N2-guanine methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tRNA (guanine(26)-N(2))-dimethyltransferase
    Names
    TRM1 tRNA methyltransferase 1 homolog
    tRNA methyltransferase 1 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009150.3 Reference EquCab3.0 Primary Assembly

      Range
      46645562..46652933
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023645275.1 → XP_023501043.1  tRNA (guanine(26)-N(2))-dimethyltransferase isoform X2

      UniProtKB/TrEMBL
      A0A5F5PSK8
      Related
      ENSECAP00000051246.2, ENSECAT00000075407.2
      Conserved Domains (2) summary
      smart00356
      Location:577 → 602
      ZnF_C3H1; zinc finger
      pfam02005
      Location:41 → 477
      TRM; N2,N2-dimethylguanosine tRNA methyltransferase

    2. XM_023645274.1 → XP_023501042.1  tRNA (guanine(26)-N(2))-dimethyltransferase isoform X1

      UniProtKB/TrEMBL
      A0A5F5PSK8, F6W9F2
      Related
      ENSECAP00000013901.4, ENSECAT00000017149.4
      Conserved Domains (2) summary
      smart00356
      Location:602 → 627
      ZnF_C3H1; zinc finger
      pfam02005
      Location:66 → 502
      TRM; N2,N2-dimethylguanosine tRNA methyltransferase
    Nucleotide Protein
    Heading Accession and Version

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