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    PCF11 PCF11 cleavage and polyadenylation factor subunit [ Equus caballus (horse) ]

    Gene ID: 100061695, updated on 11-Apr-2024

    Summary

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    Official Symbol
    PCF11provided by VGNC
    Official Full Name
    PCF11 cleavage and polyadenylation factor subunitprovided by VGNC
    Primary source
    VGNC:VGNC:21196
    See related
    Ensembl:ENSECAG00000018683
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    103 current EquCab3.0 (GCF_002863925.1) 7 NC_009150.3 (64188833..64213509, complement)
    102 previous assembly EquCab2.0 (GCF_000002305.2) 7 NC_009150.2 (62009053..62033749, complement)

    Chromosome 7 - NC_009150.3Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 90B Neighboring gene ankyrin repeat domain 42 Neighboring gene uncharacterized LOC111774326 Neighboring gene RAB30, member RAS oncogene family

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II complex binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in termination of RNA polymerase II transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of mRNA cleavage factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pre-mRNA cleavage complex 2 protein Pcf11
    Names
    PCF11, cleavage and polyadenylation factor subunit, homolog
    Pre-mRNA cleavage complex 2 protein Pcf11-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009150.3 Reference EquCab3.0 Primary Assembly

      Range
      64188833..64213509 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023645644.1 → XP_023501412.1  pre-mRNA cleavage complex 2 protein Pcf11 isoform X4

      UniProtKB/TrEMBL
      F6ZE24
      Conserved Domains (3) summary
      cd03562
      Location:19 → 130
      CID; CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA ...
      pfam09606
      Location:850 → 1199
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cl25732
      Location:195 → 437
      SMC_N; RecF/RecN/SMC N terminal domain

    2. XM_023645643.1 → XP_023501411.1  pre-mRNA cleavage complex 2 protein Pcf11 isoform X3

      UniProtKB/TrEMBL
      A0A9L0S4N4
      Related
      ENSECAP00000016536.3, ENSECAT00000020162.4
      Conserved Domains (3) summary
      cd03562
      Location:19 → 130
      CID; CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA ...
      pfam09606
      Location:850 → 1199
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cl25732
      Location:195 → 437
      SMC_N; RecF/RecN/SMC N terminal domain

    3. XM_023645642.1 → XP_023501410.1  pre-mRNA cleavage complex 2 protein Pcf11 isoform X2

      UniProtKB/TrEMBL
      A0A9L0S4N4
      Conserved Domains (2) summary
      cd03562
      Location:19 → 130
      CID; CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA ...
      pfam09606
      Location:981 → 1330
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

    4. XM_023645641.1 → XP_023501409.1  pre-mRNA cleavage complex 2 protein Pcf11 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2HWG9, A0A9L0S4N4
      Related
      ENSECAP00000039712.1, ENSECAT00000039399.3
      Conserved Domains (2) summary
      cd03562
      Location:19 → 130
      CID; CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA ...
      pfam09606
      Location:981 → 1330
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    Nucleotide Protein
    Heading Accession and Version

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