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    CNBD1 cyclic nucleotide binding domain containing 1 [ Equus caballus (horse) ]

    Gene ID: 100055345, updated on 8-Mar-2024

    Summary

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    Official Symbol
    CNBD1provided by VGNC
    Official Full Name
    cyclic nucleotide binding domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:16657
    See related
    Ensembl:ENSECAG00000026864
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See CNBD1 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    103 current EquCab3.0 (GCF_002863925.1) 9 NC_009152.3 (1765078..2174444, complement)
    102 previous assembly EquCab2.0 (GCF_000002305.2) 9 NC_009152.2 (1699568..2142752, complement)

    Chromosome 9 - NC_009152.3Genomic Context describing neighboring genes Neighboring gene matrix metallopeptidase 16 Neighboring gene isoleucine--tRNA ligase, mitochondrial-like Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC106780972 Neighboring gene cyclic nucleotide gated channel subunit beta 3 Neighboring gene copine 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    cyclic nucleotide-binding domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009152.3 Reference EquCab3.0 Primary Assembly

      Range
      1765078..2174444 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023648351.1 → XP_023504119.1  cyclic nucleotide-binding domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A3Q2HPH2, F6ZV31
      Related
      ENSECAP00000036719.1, ENSECAT00000050999.3
      Conserved Domains (2) summary
      cd00038
      Location:294 → 398
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
      cl00047
      Location:130 → 260
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

    2. XM_023648348.1 → XP_023504116.1  cyclic nucleotide-binding domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2H5G3, F6ZV31
      Related
      ENSECAP00000028316.1, ENSECAT00000058676.3
      Conserved Domains (2) summary
      cd00038
      Location:332 → 436
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
      cl00047
      Location:168 → 298
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

    3. XM_023648352.1 → XP_023504120.1  cyclic nucleotide-binding domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      F6ZV31
      Conserved Domains (2) summary
      cd00038
      Location:286 → 390
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
      cl00047
      Location:122 → 252
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

    4. XM_023648354.1 → XP_023504122.1  cyclic nucleotide-binding domain-containing protein 1 isoform X5

      UniProtKB/TrEMBL
      F6ZV31
      Conserved Domains (2) summary
      cd00038
      Location:262 → 366
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
      cl00047
      Location:98 → 228
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

    5. XM_023648353.1 → XP_023504121.1  cyclic nucleotide-binding domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      F6ZV31
      Conserved Domains (2) summary
      cd00038
      Location:286 → 390
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
      cl00047
      Location:122 → 252
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

    6. XM_023648350.1 → XP_023504118.1  cyclic nucleotide-binding domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      F6ZV31
      Conserved Domains (2) summary
      cd00038
      Location:300 → 404
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
      cl00047
      Location:136 → 266
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
    Nucleotide Protein
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