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    THAP9 THAP domain containing 9 [ Equus caballus (horse) ]

    Gene ID: 100052075, updated on 8-Mar-2024

    Summary

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    Official Symbol
    THAP9provided by VGNC
    Official Full Name
    THAP domain containing 9provided by VGNC
    Primary source
    VGNC:VGNC:58485
    See related
    Ensembl:ENSECAG00000016694
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human all
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    Genomic context

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    See THAP9 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current EquCab3.0 (GCF_002863925.1) 3 NC_009146.3 (55637246..55662461, complement)
    102 previous assembly EquCab2.0 (GCF_000002305.2) 3 NC_009146.2 (54164034..54189455, complement)

    Chromosome 3 - NC_009146.3Genomic Context describing neighboring genes Neighboring gene COP9 signalosome subunit 4 Neighboring gene lin-54 DREAM MuvB core complex component Neighboring gene small nucleolar RNA SNORA31 Neighboring gene SEC31 homolog A, COPII coat complex component Neighboring gene uncharacterized LOC111772866

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    DNA transposase THAP9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009146.3 Reference EquCab3.0 Primary Assembly

      Range
      55637246..55662461 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001915481.5 → XP_001915516.1  DNA transposase THAP9 isoform X1

      See identical proteins and their annotated locations for XP_001915516.1

      UniProtKB/TrEMBL
      F6X137
      Related
      ENSECAP00000014250.2, ENSECAT00000017530.3
      Conserved Domains (2) summary
      pfam05485
      Location:4 → 88
      THAP; THAP domain
      pfam12017
      Location:216 → 388
      Tnp_P_element; Transposase protein

    2. XM_023637833.1 → XP_023493601.1  DNA transposase THAP9 isoform X2

      Conserved Domains (1) summary
      pfam12017
      Location:72 → 244
      Tnp_P_element; Transposase protein

    3. XM_023637832.1 → XP_023493600.1  DNA transposase THAP9 isoform X2

      Conserved Domains (1) summary
      pfam12017
      Location:72 → 244
      Tnp_P_element; Transposase protein

    4. XM_023637831.1 → XP_023493599.1  DNA transposase THAP9 isoform X2

      Conserved Domains (1) summary
      pfam12017
      Location:72 → 244
      Tnp_P_element; Transposase protein
    Nucleotide Protein
    Heading Accession and Version

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