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    KLF5 KLF transcription factor 5 [ Equus caballus (horse) ]

    Gene ID: 100052058, updated on 8-Mar-2024

    Summary

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    Official Symbol
    KLF5provided by VGNC
    Official Full Name
    KLF transcription factor 5provided by VGNC
    Primary source
    VGNC:VGNC:19446
    See related
    Ensembl:ENSECAG00000010546
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See KLF5 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103 current EquCab3.0 (GCF_002863925.1) 17 NC_009160.3 (46394976..46416155)
    102 previous assembly EquCab2.0 (GCF_000002305.2) 17 NC_009160.2 (46515435..46536656)

    Chromosome 17 - NC_009160.3Genomic Context describing neighboring genes Neighboring gene DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease Neighboring gene progesterone immunomodulatory binding factor 1 Neighboring gene 40S ribosomal protein S24 pseudogene Neighboring gene uncharacterized LOC111768691 Neighboring gene 40S ribosomal protein S24 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Krueppel-like factor 5
    Names
    Kruppel like factor 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009160.3 Reference EquCab3.0 Primary Assembly

      Range
      46394976..46416155
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014732129.2 → XP_014587615.1  Krueppel-like factor 5 isoform X2

      UniProtKB/TrEMBL
      A0A9L0SJ56
      Conserved Domains (5) summary
      COG5048
      Location:268 → 342
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:287 → 306
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:342 → 364
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:328 → 353
      zf-H2C2_2; Zinc-finger double domain
      cd21579
      Location:1 → 279
      KLF5_N; N-terminal domain of Kruppel-like factor 5

    2. XM_023621686.1 → XP_023477454.1  Krueppel-like factor 5 isoform X1

      UniProtKB/TrEMBL
      A0A9L0SJ56
      Related
      ENSECAP00000074224.1, ENSECAT00000148270.1
      Conserved Domains (5) summary
      COG5048
      Location:359 → 433
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:378 → 397
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:433 → 455
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:419 → 444
      zf-H2C2_2; Zinc-finger double domain
      cd21579
      Location:3 → 370
      KLF5_N; N-terminal domain of Kruppel-like factor 5

    3. XM_023621687.1 → XP_023477455.1  Krueppel-like factor 5 isoform X2

      UniProtKB/TrEMBL
      A0A9L0SJ56
      Conserved Domains (5) summary
      COG5048
      Location:268 → 342
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:287 → 306
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:342 → 364
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:328 → 353
      zf-H2C2_2; Zinc-finger double domain
      cd21579
      Location:1 → 279
      KLF5_N; N-terminal domain of Kruppel-like factor 5
    Nucleotide Protein
    Heading Accession and Version

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