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    USF1 upstream transcription factor 1 [ Oryctolagus cuniculus (rabbit) ]

    Gene ID: 100009324, updated on 3-Apr-2024

    Summary

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    Gene symbol
    USF1
    Gene description
    upstream transcription factor 1
    See related
    Ensembl:ENSOCUG00000002352
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Oryctolagus cuniculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
    Also known as
    rUSF1a
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 13
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 13 NC_067386.1 (32236024..32242265)

    Chromosome 13 - NC_067386.1Genomic Context describing neighboring genes Neighboring gene nectin cell adhesion molecule 4 Neighboring gene Rho GTPase activating protein 30 Neighboring gene uncharacterized LOC108177656 Neighboring gene thiosulfate sulfurtransferase like domain containing 1 Neighboring gene F11 receptor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_067386.1 Chromosome 13 Reference UM_NZW_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The basic helix-loop-helix-zipper transcription factor USF1 regulates expression of the surfactant protein-A gene. Gao E, et al. J Biol Chem, 1997 Sep 12. PMID 9287355

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    upstream stimulatory factor 1
    Names
    major late transcription factor 1
    upstream stimulatory factor 1a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001082635.1 → NP_001076104.1  upstream stimulatory factor 1

      See identical proteins and their annotated locations for NP_001076104.1

      Status: PROVISIONAL

      Source sequence(s)
      AF003894
      UniProtKB/Swiss-Prot
      O02818, O02819
      UniProtKB/TrEMBL
      A0A5F9DC98
      Related
      ENSOCUP00000002031.2, ENSOCUT00000002352.2
      Conserved Domains (1) summary
      cd00083
      Location:197 → 259
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

    RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UM_NZW_1.0 Primary Assembly

    Genomic

    1. NC_067386.1 Reference UM_NZW_1.0 Primary Assembly

      Range
      32236024..32242265
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008263975.3 → XP_008262197.1  upstream stimulatory factor 1 isoform X1

      See identical proteins and their annotated locations for XP_008262197.1

      UniProtKB/TrEMBL
      A0A5F9DC98, G1SHC9
      Conserved Domains (1) summary
      cd00083
      Location:197 → 259
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

    2. XM_008263977.3 → XP_008262199.1  upstream stimulatory factor 1 isoform X2

      UniProtKB/TrEMBL
      A0A5F9DC98
      Conserved Domains (1) summary
      pfam00010
      Location:172 → 227
      HLH; Helix-loop-helix DNA-binding domain

    3. XM_051856031.1 → XP_051711991.1  upstream stimulatory factor 1 isoform X1

      UniProtKB/TrEMBL
      G1SHC9

    4. XM_008263976.3 → XP_008262198.1  upstream stimulatory factor 1 isoform X1

      See identical proteins and their annotated locations for XP_008262198.1

      UniProtKB/TrEMBL
      A0A5F9DC98, G1SHC9
      Conserved Domains (1) summary
      cd00083
      Location:197 → 259
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

    5. XM_008263978.3 → XP_008262200.1  upstream stimulatory factor 1 isoform X3

      Conserved Domains (1) summary
      pfam00010
      Location:141 → 196
      HLH; Helix-loop-helix DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O02818.1 GenPept UniProtKB/Swiss-Prot:O02818

    Gene LinkOut

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