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    AT5G10070 RNase L inhibitor protein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830871, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT5G10070
    Gene description
    RNase L inhibitor protein-like protein
    Primary source
    Araport:AT5G10070
    Locus tag
    AT5G10070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T31P16.60; T31P16_60
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    Genomic context

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    See AT5G10070 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (3148424..3150434, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene TGACG motif-binding factor 4 Neighboring gene uncharacterized protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene ENTH/VHS family protein Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001343087.1
    NM_203032.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 18S rRNA aminocarboxypropyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNase L inhibitor protein-like protein
    NP_001318524.1
    • RNase L inhibitor protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF367 (InterPro:IPR007177), RNase L inhibitor RLI, possible metal-binding domain (InterPro:IPR007209); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    NP_974761.1
    • RNase L inhibitor protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF367 (InterPro:IPR007177), RNase L inhibitor RLI, possible metal-binding domain (InterPro:IPR007209); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3148424..3150434 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343087.1 → NP_001318524.1  RNase L inhibitor protein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4KFG1
      Conserved Domains (2) summary
      pfam04034
      Location:82 → 185
      Ribo_biogen_C; Ribosome biogenesis protein, C-terminal
      pfam04068
      Location:44 → 75
      RLI; Possible Fer4-like domain in RNase L inhibitor, RLI

    2. NM_203032.2 → NP_974761.1  RNase L inhibitor protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974761.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UQA3, A0A178URH4, F4KFG2, Q9LX21
      Conserved Domains (2) summary
      pfam04034
      Location:82 → 207
      Ribo_biogen_C; Ribosome biogenesis protein, C-terminal
      pfam04068
      Location:44 → 75
      RLI; Possible Fer4-like domain in RNase L inhibitor, RLI
    Nucleotide Protein
    Heading Accession and Version

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