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    plp2b proteolipid protein 2b [ Danio rerio (zebrafish) ]

    Gene ID: 798079, updated on 11-Apr-2024

    Summary

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    Official Symbol
    plp2bprovided by ZNC
    Official Full Name
    proteolipid protein 2bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030710-11
    See related
    Ensembl:ENSDARG00000036630 AllianceGenome:ZFIN:ZDB-GENE-030710-11
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    plp2; fj47d05; wu:fj47d05
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in adaxial cell; cardiovascular system; epiphysis; and musculature system. Orthologous to human PLP2 (proteolipid protein 2). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See plp2b in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (49310755..49345471, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (49321665..49356711, complement)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 110 member A Neighboring gene prickle homolog 3 Neighboring gene si:ch211-194e1.9 Neighboring gene si:ch211-194e1.7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Identification of direct T-box target genes in the developing zebrafish mesoderm. Garnett AT, et al. Development, 2009 Mar. PMID 19158186, Free PMC Article
    2. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    proteolipid protein 2; proteolipid protein 2b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001161445.1 → NP_001154917.1  proteolipid protein 2b

      Status: PROVISIONAL

      Source sequence(s)
      BX537103
      UniProtKB/TrEMBL
      A0A8M1NRM3, B0S6H4, E7F375
      Related
      ENSDARP00000053202.6, ENSDART00000053203.7
      Conserved Domains (1) summary
      pfam01284
      Location:19 → 132
      MARVEL; Membrane-associating domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      49310755..49345471 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005167325.4 → XP_005167382.1  proteolipid protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BEQ6
      Conserved Domains (1) summary
      cl04571
      Location:19 → 132
      MARVEL; Membrane-associating domain
    Nucleotide Protein Strain
    Heading Accession and Version

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