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    tssc4 tumor suppressing subtransferable candidate 4 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 780083, updated on 5-Mar-2024

    Summary

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    Official Symbol
    tssc4provided by Xenbase
    Official Full Name
    tumor suppressing subtransferable candidate 4provided by Xenbase
    Primary source
    Xenbase:XB-GENE-22069390
    See related
    Ensembl:ENSXETG00000024947
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (22342173..22347308)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (13091994..13096656)

    Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene tetraspanin 32 Neighboring gene CD81 protein Neighboring gene anoctamin-9 Neighboring gene acyl-CoA (8-3)-desaturase-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC147133

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    U5 small nuclear ribonucleoprotein TSSC4; protein TSSC4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001079159.1 → NP_001072627.1  U5 small nuclear ribonucleoprotein TSSC4

      See identical proteins and their annotated locations for NP_001072627.1

      Status: PROVISIONAL

      Source sequence(s)
      BC123060
      UniProtKB/TrEMBL
      F6W1C1, Q0IHP0
      Related
      ENSXETP00000053605.3, ENSXETT00000053605.4
      Conserved Domains (1) summary
      pfam15264
      Location:79 → 206
      TSSC4; tumor suppressing sub-chromosomal transferable candidate 4

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      22342173..22347308
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012961362.3 → XP_012816816.2  protein TSSC4 isoform X1

      UniProtKB/TrEMBL
      A0A803KIR9
      Conserved Domains (1) summary
      pfam15264
      Location:87 → 214
      TSSC4; tumor suppressing sub-chromosomal transferable candidate 4

    2. XM_012961361.3 → XP_012816815.2  protein TSSC4 isoform X1

      UniProtKB/TrEMBL
      A0A803KIR9
      Conserved Domains (1) summary
      pfam15264
      Location:87 → 214
      TSSC4; tumor suppressing sub-chromosomal transferable candidate 4

    3. XM_012961360.3 → XP_012816814.2  protein TSSC4 isoform X1

      UniProtKB/TrEMBL
      A0A803KIR9
      Conserved Domains (1) summary
      pfam15264
      Location:87 → 214
      TSSC4; tumor suppressing sub-chromosomal transferable candidate 4

    4. XM_031900227.1 → XP_031756087.1  protein TSSC4 isoform X1

      UniProtKB/TrEMBL
      A0A803KIR9
      Related
      ENSXETP00000101978.1, ENSXETT00000122083.1
      Conserved Domains (1) summary
      pfam15264
      Location:87 → 214
      TSSC4; tumor suppressing sub-chromosomal transferable candidate 4
    Nucleotide Protein Strain
    Heading Accession and Version

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