LMX1A LIM homeobox transcription factor 1 alpha [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: LMX1Aprovided by VGNC
Official Full Name: LIM homeobox transcription factor 1 alphaprovided by VGNC
Primary source: VGNC:VGNC:8066
Gene type: protein coding
RefSeq status: MODEL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	1	NC_072398.2 (83777275..83908191)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	1	NC_072398.1 (147441413..147570078, complement)

Chromosome 1 - NC_072398.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

D1S2453 (e-PCR)
- UniSTS:19716

SHGC-133109 (e-PCR)
- UniSTS:171020

SHGC-155128 (e-PCR)
- UniSTS:182058

AL009664 (e-PCR)
- UniSTS:74331

LMX1A_7814 (e-PCR)
- UniSTS:468079

D1S426 (e-PCR), detects polymorphism
- UniSTS:46759

SHGC-146985 (e-PCR)
- UniSTS:175544

AL009921 (e-PCR)
- UniSTS:67808

D1S426 (e-PCR), detects polymorphism
- UniSTS:10997

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info	PubMed
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in neuron differentiation	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: LIM homeobox transcription factor 1-alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_072398.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

83777275..83908191

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_063795724.1 → XP_063651794.1 LIM homeobox transcription factor 1-alpha isoform X2
XM_063795726.1 → XP_063651796.1 LIM homeobox transcription factor 1-alpha isoform X2
XM_054655243.2 → XP_054511218.1 LIM homeobox transcription factor 1-alpha isoform X2
XM_063795729.1 → XP_063651799.1 LIM homeobox transcription factor 1-alpha isoform X2
XM_016931419.3 → XP_016786908.1 LIM homeobox transcription factor 1-alpha isoform X1

Conserved Domains (2) summary

cd09378
Location:14 → 68

LIM2_Lmx1a_Lmx1b; The second LIM domain of Lmx1a and Lmx1b

pfam00046
Location:118 → 171

Homeobox; Homeobox domain