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    PDE6D phosphodiesterase 6D [ Pan troglodytes (chimpanzee) ]

    Gene ID: 738319, updated on 3-Apr-2024

    Summary

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    Official Symbol
    PDE6Dprovided by VGNC
    Official Full Name
    phosphodiesterase 6Dprovided by VGNC
    Primary source
    VGNC:VGNC:2751
    Locus tag
    CK820_G0010851
    See related
    Ensembl:ENSPTRG00000013030
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 2B
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 13 NC_072411.2 (133978206..134032077, complement)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 2B NC_072400.1 (133889361..133943237, complement)

    Chromosome 13 - NC_072411.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107973738 Neighboring gene U4 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene prothymosin alpha Neighboring gene COP9 signalosome subunit 7B Neighboring gene natriuretic peptide C Neighboring gene DIS3 like 3'-5' exoribonuclease 2 Neighboring gene microRNA mir-562

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in sensory perception of light stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta
    Names
    phosphodiesterase 6D, cGMP-specific, rod, delta
    XP_001144711.1
    XP_054535493.1
    XP_054535494.1
    XP_063647852.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072411.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      133978206..134032077 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054679518.2 → XP_054535493.1  retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta isoform X2

    2. XM_063791782.1 → XP_063647852.1  retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta isoform X2

    3. XM_001144711.7 → XP_001144711.1  retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta isoform X1

      See identical proteins and their annotated locations for XP_001144711.1

      UniProtKB/TrEMBL
      A0A2I3T805, A0A2J8NF29, A0A6D2VSC0, H2QJL5
      Related
      ENSPTRP00000022277.3
      Conserved Domains (1) summary
      pfam05351
      Location:10 → 149
      GMP_PDE_delta; GMP-PDE, delta subunit

    4. XM_054679519.2 → XP_054535494.1  retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta isoform X3

      UniProtKB/TrEMBL
      A0A2I3S9H0, A0A2J8NF46, A0A6D2Y0L2
    Nucleotide Protein
    Heading Accession and Version

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