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    C5h1orf127 similar to human chromosome 1 open reading frame 127 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 691354, updated on 5-Mar-2024

    Summary

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    Official Symbol
    C5h1orf127provided by RGD
    Official Full Name
    similar to human chromosome 1 open reading frame 127provided by RGD
    Primary source
    RGD:1585063
    See related
    AllianceGenome:RGD:1585063
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to act upstream of or within determination of left/right symmetry and heart development. Orthologous to human C1orf127 (chromosome 1 open reading frame 127). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Muscle (RPKM 38.8), Heart (RPKM 24.9) and 3 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    5q36
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (164358333..164393758)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (159075217..159110642)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (165464832..165491375)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene MBL associated serine protease 2 Neighboring gene TAR DNA binding protein Neighboring gene small nucleolar RNA, H/ACA box 21 Neighboring gene ribosomal protein L14, pseudogene 2 Neighboring gene uncharacterized LOC103692510 Neighboring gene ribosomal protein L36, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Global genetic analysis in mice unveils central role for cilia in congenital heart disease. Li Y, et al. Nature, 2015 May 28. PMID 25807483, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    acts_upstream_of_or_within determination of left/right symmetry ISO
    Inferred from Sequence Orthology
    more info
    		  
    acts_upstream_of_or_within heart development ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: uncharacterized protein C1orf127 homolog
    Names
    uncharacterized protein C1orf127 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      164358333..164393758
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039111358.2 → XP_038967286.1  LOW QUALITY PROTEIN: uncharacterized protein C1orf127 homolog

      Conserved Domains (2) summary
      PHA03247
      Location:368 → 683
      PHA03247; large tegument protein UL36; Provisional
      pfam15094
      Location:144 → 358
      DUF4556; Domain of unknown function (DUF4556)
    Nucleotide Protein Strain
    Heading Accession and Version

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