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    SNAP47 synaptosome associated protein 47 [ Bos taurus (cattle) ]

    Gene ID: 618546, updated on 5-Mar-2024

    Summary

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    Official Symbol
    SNAP47provided by VGNC
    Official Full Name
    synaptosome associated protein 47provided by VGNC
    Primary source
    VGNC:VGNC:35053
    See related
    BGD:BT26954; Ensembl:ENSBTAG00000004188
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    C1orf142; C7H1orf142
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 7 NC_037334.1 (3402641..3469381, complement)

    Chromosome 7 - NC_037334.1Genomic Context describing neighboring genes Neighboring gene RNA-binding motif, single-stranded-interacting protein 2-like Neighboring gene small ribosomal subunit protein eS12-like Neighboring gene jumonji domain containing 4 Neighboring gene zinc finger protein 93

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037334.1 Chromosome 7 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The dysbindin-containing complex (BLOC-1) in brain: developmental regulation, interaction with SNARE proteins and role in neurite outgrowth. Ghiani CA, et al. Mol Psychiatry, 2010 Feb. PMID 19546860, Free PMC Article
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC151654

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables syntaxin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in exocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synaptic vesicle fusion to presynaptic active zone membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synaptic vesicle priming IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SNARE complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    synaptosomal-associated protein 47
    Names
    SNAP-47
    synaptosomal-associated 47 kDa protein
    synaptosomal-associated protein, 47kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001102320.1 → NP_001095790.1  synaptosomal-associated protein 47

      See identical proteins and their annotated locations for NP_001095790.1

      Status: PROVISIONAL

      Source sequence(s)
      BC149093
      UniProtKB/Swiss-Prot
      A6QP11
      UniProtKB/TrEMBL
      F1MST4
      Related
      ENSBTAP00000005482.5, ENSBTAT00000005482.6
      Conserved Domains (3) summary
      cd15854
      Location:360 → 418
      SNARE_SNAP47C; C-terminal SNARE motif of SNAP47
      cd15888
      Location:118 → 171
      SNARE_SNAP47N; N-terminal SNARE motif of SNAP47
      cl17171
      Location:42 → 98
      PH-like; Pleckstrin homology-like domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037334.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      3402641..3469381 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024994637.2 → XP_024850405.1  synaptosomal-associated protein 47 isoform X1

      UniProtKB/TrEMBL
      F1MST4
      Conserved Domains (3) summary
      cd15854
      Location:337 → 395
      SNARE_SNAP47C; C-terminal SNARE motif of SNAP47
      cd15888
      Location:178 → 231
      SNARE_SNAP47N; N-terminal SNARE motif of SNAP47
      cl17171
      Location:102 → 158
      PH-like; Pleckstrin homology-like domain

    RNA

    1. XR_009495113.1 RNA Sequence

      Related
      ENSBTAT00000104211.1
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A6QP11.1 GenPept UniProtKB/Swiss-Prot:A6QP11

    Gene LinkOut

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