RAB40C RAB40C, member RAS oncogene family [Canis lupus familiaris (dog)] - Gene

Summary

Gene symbol: RAB40C
Gene description: RAB40C, member RAS oncogene family
See related: Ensembl:ENSCAFG00845027974
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 6

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	6	NC_051810.1 (40280019..40306809, complement)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	6	NC_006588.4 (41201465..41228245, complement)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	6	NC_049227.1 (40407910..40434695, complement)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	6	NC_049266.1 (39968542..39995318, complement)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	6	NC_049747.1 (39928729..39955488, complement)

Chromosome 6 - NC_051810.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables GTP binding	IEA Inferred from Electronic Annotation more info	PubMed
enables GTPase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in intracellular signal transduction	IEA Inferred from Electronic Annotation more info	PubMed
involved_in protein localization to plasma membrane	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in endosome	IEA Inferred from Electronic Annotation more info	PubMed
located_in plasma membrane	IEA Inferred from Electronic Annotation more info	PubMed
located_in synaptic vesicle	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: ras-related protein Rab-40C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051810.1 Reference ROS_Cfam_1.0

Range

40280019..40306809 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038669725.1 → XP_038525653.1 ras-related protein Rab-40C isoform X1

UniProtKB/TrEMBL

A0A8C0K9P5, A0A8C0MW49, A0A8C0MZ34, A0A8I3PVM2, A0A8I3SB97

Related

ENSCAFP00845038781.1, ENSCAFT00845049427.1

Conserved Domains (2) summary

cd04121
Location:9 → 281

Rab40; Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

cd03742
Location:187 → 229

SOCS_Rab40; SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as ...
XM_038669726.1 → XP_038525654.1 ras-related protein Rab-40C isoform X2

UniProtKB/TrEMBL

A0A8C0RHM4

Conserved Domains (2) summary

cd03742
Location:142 → 184

SOCS_Rab40; SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as ...

cl38936
Location:4 → 236

P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

Alternate UMICH_Zoey_3.1

Genomic

NC_049266.1 Alternate UMICH_Zoey_3.1

Range

39968542..39995318 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038479645.1 → XP_038335573.1 ras-related protein Rab-40C isoform X1

Conserved Domains (2) summary

cd04121
Location:9 → 281

Rab40; Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

cd03742
Location:187 → 229

SOCS_Rab40; SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as ...
XM_038479646.1 → XP_038335574.1 ras-related protein Rab-40C isoform X2

Conserved Domains (2) summary

cd03742
Location:142 → 184

SOCS_Rab40; SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as ...

cl38936
Location:4 → 236

P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049747.1 Alternate UNSW_CanFamBas_1.0

Range

39928729..39955488 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038605049.1 → XP_038460977.1 ras-related protein Rab-40C isoform X1

Conserved Domains (2) summary

cd04121
Location:9 → 281

Rab40; Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

cd03742
Location:187 → 229

SOCS_Rab40; SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as ...
XM_038605050.1 → XP_038460978.1 ras-related protein Rab-40C isoform X2

Conserved Domains (2) summary

cd03742
Location:142 → 184

SOCS_Rab40; SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as ...

cl38936
Location:4 → 236

P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049227.1 Alternate UU_Cfam_GSD_1.0

Range

40407910..40434695 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038540924.1 → XP_038396852.1 ras-related protein Rab-40C isoform X1

UniProtKB/TrEMBL

A0A8C0K9P5, A0A8C0MW49, A0A8C0MZ34, A0A8I3PVM2, A0A8I3SB97

Conserved Domains (2) summary

cd04121
Location:9 → 281

Rab40; Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

cd03742
Location:187 → 229

SOCS_Rab40; SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as ...
XM_038540925.1 → XP_038396853.1 ras-related protein Rab-40C isoform X2

UniProtKB/TrEMBL

A0A8C0RHM4

Conserved Domains (2) summary

cd03742
Location:142 → 184

SOCS_Rab40; SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as ...

cl38936
Location:4 → 236

P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006588.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

41201465..41228245 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038551303.1 → XP_038407231.1 ras-related protein Rab-40C isoform X1

UniProtKB/TrEMBL

A0A8C0K9P5, A0A8C0MW49, A0A8C0MZ34, A0A8I3PVM2, A0A8I3SB97

Conserved Domains (2) summary

cd04121
Location:9 → 281

Rab40; Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

cd03742
Location:187 → 229

SOCS_Rab40; SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as ...
XM_038551306.1 → XP_038407234.1 ras-related protein Rab-40C isoform X2

UniProtKB/TrEMBL

A0A8C0RHM4

Conserved Domains (2) summary

cd03742
Location:142 → 184

SOCS_Rab40; SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as ...

cl38936
Location:4 → 236

P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases