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    SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 [ Canis lupus familiaris (dog) ]

    Gene ID: 609283, updated on 5-Mar-2024

    Summary

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    Official Symbol
    SNRNP48provided by VGNC
    Official Full Name
    small nuclear ribonucleoprotein U11/U12 subunit 48provided by VGNC
    Primary source
    VGNC:VGNC:46608
    See related
    Ensembl:ENSCAFG00845017442
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 35
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 35 NC_051839.1 (7612043..7629839)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 35 NC_006617.4 (7532684..7550530)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 35 NC_049256.1 (8823390..8841241)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 35 NC_049295.1 (7465089..7482892)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 35 NC_049776.1 (7490744..7508567)

    Chromosome 35 - NC_051839.1Genomic Context describing neighboring genes Neighboring gene chromosome 11 open reading frame 1 ortholog pseudogene Neighboring gene desmoplakin Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC119867609

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    part_of U12-type spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U11/U12 small nuclear ribonucleoprotein 48 kDa protein; LOW QUALITY PROTEIN: U11/U12 small nuclear ribonucleoprotein 48 kDa protein
    Names
    small nuclear ribonucleoprotein 48kDa (U11/U12)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051839.1 Reference ROS_Cfam_1.0

      Range
      7612043..7629839
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038446325.1 → XP_038302253.1  U11/U12 small nuclear ribonucleoprotein 48 kDa protein

      UniProtKB/TrEMBL
      A0A8C0KHA1, A0A8C0YYR8
      Related
      ENSCAFP00845024214.1, ENSCAFT00845030895.1
      Conserved Domains (1) summary
      pfam05253
      Location:57 → 80
      zf-U11-48K; U11-48K-like CHHC zinc finger

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049295.1 Alternate UMICH_Zoey_3.1

      Range
      7465089..7482892
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038520492.1 → XP_038376420.1  LOW QUALITY PROTEIN: U11/U12 small nuclear ribonucleoprotein 48 kDa protein

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049776.1 Alternate UNSW_CanFamBas_1.0

      Range
      7490744..7508567
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038648533.1 → XP_038504461.1  U11/U12 small nuclear ribonucleoprotein 48 kDa protein

      Conserved Domains (1) summary
      pfam05253
      Location:57 → 80
      zf-U11-48K; U11-48K-like CHHC zinc finger

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049256.1 Alternate UU_Cfam_GSD_1.0

      Range
      8823390..8841241
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038584126.1 → XP_038440054.1  U11/U12 small nuclear ribonucleoprotein 48 kDa protein

      UniProtKB/TrEMBL
      A0A8C0KHA1, A0A8C0YYR8
      Conserved Domains (1) summary
      pfam05253
      Location:57 → 80
      zf-U11-48K; U11-48K-like CHHC zinc finger

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006617.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      7532684..7550530
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_846517.6 → XP_851610.3  U11/U12 small nuclear ribonucleoprotein 48 kDa protein

      UniProtKB/TrEMBL
      A0A8C0KHA1, A0A8C0YYR8
      Conserved Domains (1) summary
      pfam05253
      Location:57 → 80
      zf-U11-48K; U11-48K-like CHHC zinc finger
    Nucleotide Protein
    Heading Accession and Version

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