WDR6 WD repeat domain 6 [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: WDR6provided by VGNC
Official Full Name: WD repeat domain 6provided by VGNC
Primary source: VGNC:VGNC:48378
See related: Ensembl:ENSCAFG00845029474
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 20

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	20	NC_051824.1 (40505441..40515223, complement)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	20	NC_006602.4 (40066440..40075980, complement)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	20	NC_049241.1 (40555322..40564865, complement)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	20	NC_049280.1 (39872036..39881691, complement)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	20	NC_049761.1 (40275813..40285364, complement)

Chromosome 20 - NC_051824.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in tRNA methylation	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: WD repeat-containing protein 6; LOW QUALITY PROTEIN: WD repeat-containing protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051824.1 Reference ROS_Cfam_1.0

Range

40505441..40515223 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038427805.1 → XP_038283733.1 LOW QUALITY PROTEIN: WD repeat-containing protein 6

UniProtKB/TrEMBL

A0A8C0L8F5, A0A8C0NPJ4, A0A8I3Q3C9

Related

ENSCAFP00845040974.1, ENSCAFT00845052239.1

Conserved Domains (2) summary

sd00039
Location:117 → 154

7WD40; WD40 repeat [structural motif]

cl29593
Location:206 → 325

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

Alternate UMICH_Zoey_3.1

Genomic

NC_049280.1 Alternate UMICH_Zoey_3.1

Range

39872036..39881691 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038503479.1 → XP_038359407.1 WD repeat-containing protein 6

Conserved Domains (2) summary

sd00039
Location:117 → 154

7WD40; WD40 repeat [structural motif]

cl29593
Location:206 → 325

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_038503478.1 → XP_038359406.1 WD repeat-containing protein 6

Conserved Domains (2) summary

sd00039
Location:117 → 154

7WD40; WD40 repeat [structural motif]

cl29593
Location:206 → 325

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049761.1 Alternate UNSW_CanFamBas_1.0

Range

40275813..40285364 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038630637.1 → XP_038486565.1 WD repeat-containing protein 6

Conserved Domains (2) summary

sd00039
Location:117 → 154

7WD40; WD40 repeat [structural motif]

cl29593
Location:206 → 325

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_038630636.1 → XP_038486564.1 WD repeat-containing protein 6

Conserved Domains (2) summary

sd00039
Location:117 → 154

7WD40; WD40 repeat [structural motif]

cl29593
Location:206 → 325

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049241.1 Alternate UU_Cfam_GSD_1.0

Range

40555322..40564865 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038566493.1 → XP_038422421.1 WD repeat-containing protein 6

UniProtKB/TrEMBL

A0A8C0L8F5, A0A8C0NPJ4, A0A8I3Q3C9

Conserved Domains (2) summary

sd00039
Location:117 → 154

7WD40; WD40 repeat [structural motif]

cl29593
Location:206 → 325

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_038566492.1 → XP_038422420.1 WD repeat-containing protein 6

UniProtKB/TrEMBL

A0A8C0L8F5, A0A8C0NPJ4, A0A8I3Q3C9

Conserved Domains (2) summary

sd00039
Location:117 → 154

7WD40; WD40 repeat [structural motif]

cl29593
Location:206 → 325

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006602.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

40066440..40075980 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038455552.1 → XP_038311480.1 WD repeat-containing protein 6

UniProtKB/TrEMBL

A0A8C0L8F5, A0A8C0NPJ4, A0A8I3Q3C9

Conserved Domains (2) summary

sd00039
Location:117 → 154

7WD40; WD40 repeat [structural motif]

cl29593
Location:206 → 325

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_005632573.4 → XP_005632630.1 WD repeat-containing protein 6

UniProtKB/TrEMBL

A0A8C0L8F5, A0A8C0NPJ4, A0A8I3Q3C9

Conserved Domains (2) summary

sd00039
Location:117 → 154

7WD40; WD40 repeat [structural motif]

cl29593
Location:206 → 325

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...