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    si:dkey-82f1.1 si:dkey-82f1.1 [ Danio rerio (zebrafish) ]

    Gene ID: 563917, updated on 27-Mar-2024

    Summary

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    Official Symbol
    si:dkey-82f1.1provided by ZNC
    Official Full Name
    si:dkey-82f1.1provided by ZNC
    Primary source
    ZFIN:ZDB-LINCRNAG-030131-2982
    See related
    Ensembl:ENSDARG00000096850 AllianceGenome:ZFIN:ZDB-LINCRNAG-030131-2982
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Orthologs
    all
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    Genomic context

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    See si:dkey-82f1.1 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (2545740..2638797, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (2392886..2485407, complement)

    Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene transcriptional enhancer factor TEF-3-like Neighboring gene uncharacterized LOC101887189 Neighboring gene aarF domain containing kinase 2 Neighboring gene Bardet-Biedl syndrome 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    DENN domain-containing protein 2A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007136.7 Reference GRCz11 Primary Assembly

      Range
      2545740..2638797 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021470581.1 → XP_021326256.1  DENN domain-containing protein 2A

      UniProtKB/TrEMBL
      A0A8M9PV68
      Related
      ENSDART00000188890.1
      Conserved Domains (3) summary
      smart00801
      Location:890 → 968
      dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
      smart00800
      Location:561 → 653
      uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
      pfam02141
      Location:660 → 841
      DENN; DENN (AEX-3) domain
    Nucleotide Protein Strain
    Heading Accession and Version

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    Molecular Biology Databases