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    jazf1a JAZF zinc finger 1a [ Danio rerio (zebrafish) ]

    Gene ID: 561144, updated on 27-Mar-2024

    Summary

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    Official Symbol
    jazf1aprovided by ZNC
    Official Full Name
    JAZF zinc finger 1aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060503-492
    See related
    Ensembl:ENSDARG00000102551 AllianceGenome:ZFIN:ZDB-GENE-060503-492
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch211-204j16.1
    Summary
    Predicted to enable transcription corepressor activity. Predicted to act upstream of or within negative regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human JAZF1 (JAZF zinc finger 1). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See jazf1a in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (19509798..19549121)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (19936197..19972476)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene TLR4 interactor with leucine-rich repeats Neighboring gene cAMP responsive element binding protein 5a Neighboring gene Tax1 (human T-cell leukemia virus type I) binding protein 1a Neighboring gene 3-hydroxyisobutyrate dehydrogenase a Neighboring gene even-skipped homeobox 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    juxtaposed with another zinc finger protein 1; juxtaposed with another zinc finger protein 1a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001044955.1 → NP_001038420.1  juxtaposed with another zinc finger protein 1a

      Status: PROVISIONAL

      Source sequence(s)
      BX601646
      UniProtKB/TrEMBL
      A0A8M1N9M9
      Related
      ENSDARP00000153927.1, ENSDART00000180065.1
      Conserved Domains (1) summary
      pfam16159
      Location:9 → 50
      FOXP-CC; FOXP coiled-coil domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      19509798..19549121
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005159518.4 → XP_005159575.1  juxtaposed with another zinc finger protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A0R4IVX5, A0A8M2B6F5
      Related
      ENSDARP00000139743.1, ENSDART00000172410.2
      Conserved Domains (1) summary
      pfam16159
      Location:68 → 111
      FOXP-CC; FOXP coiled-coil domain
    Nucleotide Protein
    Heading Accession and Version

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