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    crip3 cysteine-rich protein 3 [ Danio rerio (zebrafish) ]

    Gene ID: 556515, updated on 27-Mar-2024

    Summary

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    Official Symbol
    crip3provided by ZNC
    Official Full Name
    cysteine-rich protein 3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-130530-620
    See related
    Ensembl:ENSDARG00000043395 AllianceGenome:ZFIN:ZDB-GENE-130530-620
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:dkey-237e17.1
    Summary
    Predicted to enable metal ion binding activity. Orthologous to human CRIP3 (cysteine rich protein 3). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 17
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (21964494..21982606)
    105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (21944670..21962380)

    Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1a Neighboring gene HtrA serine peptidase 1a Neighboring gene solute carrier family 22 member 7b, tandem duplicate 3 Neighboring gene solute carrier family 22 member 7b, tandem duplicate 2 Neighboring gene solute carrier family 22 member 7b, tandem duplicate 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. In vitro characterization of zebrafish (Danio rerio) organic anion transporters Oat2a-e. Dragojević J, et al. Toxicol In Vitro, 2018 Feb. PMID 29030288
    2. Mapping single-cell atlases throughout Metazoa unravels cell type evolution. Tarashansky AJ, et al. Elife, 2021 May 4. PMID 33944782, Free PMC Article
    3. Phylogenetic, syntenic, and tissue expression analysis of slc22 genes in zebrafish (Danio rerio). Mihaljevic I, et al. BMC Genomics, 2016 Aug 12. PMID 27519738, Free PMC Article
    4. Transcriptomic analyses reveal novel genes with sexually dimorphic expression in the zebrafish gonad and brain. Sreenivasan R, et al. PLoS One, 2008 Mar 12. PMID 18335061, Free PMC Article
    5. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    cysteine-rich protein 3
    Names
    zmp:0000000617

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007128.7 Reference GRCz11 Primary Assembly

      Range
      21964494..21982606
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021467403.1 → XP_021323078.1  cysteine-rich protein 3

      UniProtKB/TrEMBL
      A0A8M9P9H3, E7F2B4
      Related
      ENSDARP00000063703.4, ENSDART00000063704.6
      Conserved Domains (2) summary
      cd09476
      Location:5 → 58
      LIM1_TLP; The first LIM domain of thymus LIM protein (TLP)
      cd09477
      Location:128 → 181
      LIM2_TLP; The second LIM domain of thymus LIM protein (TLP)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394986.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      215465..233357
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_679338.8 → XP_684430.1  cysteine-rich protein 3

      UniProtKB/TrEMBL
      A0A8M9P9H3, E7F2B4
      Conserved Domains (2) summary
      cd09476
      Location:5 → 58
      LIM1_TLP; The first LIM domain of thymus LIM protein (TLP)
      cd09477
      Location:128 → 181
      LIM2_TLP; The second LIM domain of thymus LIM protein (TLP)
    Nucleotide Protein Strain
    Heading Accession and Version

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