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    cebpz CCAAT enhancer binding protein zeta [ Danio rerio (zebrafish) ]

    Gene ID: 550440, updated on 27-Mar-2024

    Summary

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    Official Symbol
    cebpzprovided by ZNC
    Official Full Name
    CCAAT enhancer binding protein zetaprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050417-261
    See related
    Ensembl:ENSDARG00000045857 AllianceGenome:ZFIN:ZDB-GENE-050417-261
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    wu:fi26d06; zgc:112104
    Summary
    Predicted to be active in nucleus. Is expressed in optic cup and optic tectum. Orthologous to human CEBPZ (CCAAT enhancer binding protein zeta). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    See cebpz in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (3290188..3310020, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (3272687..3292519, complement)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene ribosomal protein S6 kinase polypeptide 1 Neighboring gene NADH:ubiquinone oxidoreductase complex assembly factor 7 Neighboring gene myristoylated alanine-rich protein kinase C substrate a Neighboring gene major facilitator superfamily domain containing 4B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Genome-wide, whole mount in situ analysis of transcriptional regulators in zebrafish embryos. Armant O, et al. Dev Biol, 2013 Aug 15. PMID 23684812, Free PMC Article
    2. Transcriptomic analyses reveal novel genes with sexually dimorphic expression in the zebrafish gonad and brain. Sreenivasan R, et al. PLoS One, 2008 Mar 12. PMID 18335061, Free PMC Article
    3. Comprehensive expression map of transcription regulators in the adult zebrafish telencephalon reveals distinct neurogenic niches. Diotel N, et al. J Comp Neurol, 2015 Jun 1. PMID 25556858, Free PMC Article
    4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    CCAAT/enhancer-binding protein zeta
    Names
    CCAAT/enhancer binding protein (C/EBP), zeta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017745.3 → NP_001017745.3  CCAAT/enhancer-binding protein zeta

      Status: VALIDATED

      Source sequence(s)
      CU550712, CU570797
      UniProtKB/TrEMBL
      A0A8M1N5B4, F1R9Z2
      Related
      ENSDARP00000090088.4, ENSDART00000099315.5
      Conserved Domains (2) summary
      COG5593
      Location:236 → 960
      COG5593; Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
      pfam03914
      Location:529 → 730
      CBF; CBF/Mak21 family

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      3290188..3310020 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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