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    spin1 spindlin 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 549851, updated on 5-Mar-2024

    Summary

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    Official Symbol
    spin1provided by Xenbase
    Official Full Name
    spindlin 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-954616
    See related
    Ensembl:ENSXETG00000010870
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    spin
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (137543832..137569998, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (125351769..125378380, complement)

    Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene major facilitator superfamily domain containing 14B like Neighboring gene nitrile-specifier protein 5-like Neighboring gene nucleoredoxin like 2 Neighboring gene acrosin-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within gamete generation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    spindlin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017097.2 → NP_001017097.1  spindlin-1

      See identical proteins and their annotated locations for NP_001017097.1

      Status: PROVISIONAL

      Source sequence(s)
      CR761309
      UniProtKB/TrEMBL
      A0A803K4L4, A9ULI5, F6QDK9, F7ELF7
      Related
      ENSXETP00000023772.2, ENSXETT00000023772.4
      Conserved Domains (1) summary
      pfam02513
      Location:54 → 102
      Spin-Ssty; Spin/Ssty Family

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      137543832..137569998 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012963305.3 → XP_012818759.1  spindlin-1 isoform X1

      See identical proteins and their annotated locations for XP_012818759.1

      UniProtKB/TrEMBL
      A0A803K4L4, A9ULI5, F6QDK9, F7ELF7
      Conserved Domains (1) summary
      pfam02513
      Location:54 → 102
      Spin-Ssty; Spin/Ssty Family

    2. XM_012963303.3 → XP_012818757.1  spindlin-1 isoform X1

      See identical proteins and their annotated locations for XP_012818757.1

      UniProtKB/TrEMBL
      A0A803K4L4, A9ULI5, F6QDK9, F7ELF7
      Conserved Domains (1) summary
      pfam02513
      Location:54 → 102
      Spin-Ssty; Spin/Ssty Family

    3. XM_031900537.1 → XP_031756397.1  spindlin-1 isoform X1

      UniProtKB/TrEMBL
      A0A803K4L4, A9ULI5, F6QDK9, F7ELF7
      Conserved Domains (1) summary
      pfam02513
      Location:54 → 102
      Spin-Ssty; Spin/Ssty Family
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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