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    serinc2 serine incorporator 2 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 549316, updated on 5-Mar-2024

    Summary

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    Official Symbol
    serinc2provided by Xenbase
    Official Full Name
    serine incorporator 2provided by Xenbase
    Primary source
    Xenbase:XB-GENE-968901
    See related
    Ensembl:ENSXETG00000012918
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    tde2l
    Orthologs
    human mouse all
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    Genomic context

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    See serinc2 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (79054808..79105640, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (53263212..53302755, complement)

    Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116408845 Neighboring gene endothelin 2 Neighboring gene HIVEP zinc finger 3 Neighboring gene cAMP-dependent protein kinase inhibitor beta Neighboring gene fatty acid binding protein 3 Neighboring gene zinc finger CCHC-type containing 17

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    serine incorporator 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001016562.2 → NP_001016562.1  serine incorporator 2 precursor

      See identical proteins and their annotated locations for NP_001016562.1

      Status: PROVISIONAL

      Source sequence(s)
      CR760690
      UniProtKB/TrEMBL
      A0A5S6LCX9, A0A6I8QX67, Q28HX7
      Related
      ENSXETP00000072936.2, ENSXETT00000071844.2
      Conserved Domains (1) summary
      pfam03348
      Location:16 → 446
      Serinc; Serine incorporator (Serinc)

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      79054808..79105640 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031895980.1 → XP_031751840.1  serine incorporator 2 isoform X1

      UniProtKB/TrEMBL
      A0A5S6LCX9, A0A6I8QTV6
      Conserved Domains (1) summary
      pfam03348
      Location:5 → 434
      Serinc; Serine incorporator (Serinc)

    2. XM_012956985.3 → XP_012812439.2  serine incorporator 2 isoform X1

      UniProtKB/TrEMBL
      A0A5S6LCX9, A0A6I8QTV6
      Related
      ENSXETP00000075722.2, ENSXETT00000071192.2
      Conserved Domains (1) summary
      pfam03348
      Location:5 → 434
      Serinc; Serine incorporator (Serinc)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.