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    lrch2 leucine-rich repeats and calponin homology (CH) domain containing 2 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 549134, updated on 5-Mar-2024

    Summary

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    Official Symbol
    lrch2provided by Xenbase
    Official Full Name
    leucine-rich repeats and calponin homology (CH) domain containing 2provided by Xenbase
    Primary source
    Xenbase:XB-GENE-5753506
    See related
    Ensembl:ENSXETG00000010141
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (66405677..66455190, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (45172379..45223761, complement)

    Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene interleukin 13 receptor subunit alpha 2 Neighboring gene uncharacterized LOC116407049 Neighboring gene UAP56-interacting factor Neighboring gene plastin 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    leucine-rich repeat and calponin homology domain-containing protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001016380.2 → NP_001016380.1  leucine-rich repeat and calponin homology domain-containing protein 2

      See identical proteins and their annotated locations for NP_001016380.1

      Status: PROVISIONAL

      Source sequence(s)
      CR761229
      UniProtKB/TrEMBL
      A0A6I8Q0U0, F6TRI7, F6XKQ0, Q28GU0
      Related
      ENSXETP00000022370.4, ENSXETT00000022370.5
      Conserved Domains (5) summary
      cd00116
      Location:123 → 237
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:79 → 99
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00307
      Location:627 → 734
      CH; Calponin homology (CH) domain
      pfam12799
      Location:123 → 160
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:213 → 269
      LRR_8; Leucine rich repeat

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      66405677..66455190 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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