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    FAM193B family with sequence similarity 193 member B [ Bos taurus (cattle) ]

    Gene ID: 538655, updated on 5-Mar-2024

    Summary

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    Official Symbol
    FAM193Bprovided by VGNC
    Official Full Name
    family with sequence similarity 193 member Bprovided by VGNC
    Primary source
    VGNC:VGNC:28774
    See related
    Ensembl:ENSBTAG00000015192
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See FAM193B in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 7 NC_037334.1 (39020440..39051228, complement)

    Chromosome 7 - NC_037334.1Genomic Context describing neighboring genes Neighboring gene docking protein 3 Neighboring gene DEAD-box helicase 41 Neighboring gene transmembrane emp24 domain-containing protein 9 Neighboring gene ubiquitin-conjugating enzyme E2 G1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037334.1 Chromosome 7 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC138012

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein FAM193B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001046433.2 → NP_001039898.2  protein FAM193B

      See identical proteins and their annotated locations for NP_001039898.2

      Status: VALIDATED

      Source sequence(s)
      BC151322, EH157173
      UniProtKB/Swiss-Prot
      A7MB40, Q2HJB4
      Related
      ENSBTAP00000049740.1, ENSBTAT00000054949.3
      Conserved Domains (1) summary
      pfam15914
      Location:768 → 818
      FAM193_C; FAM193 family C-terminal

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037334.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      39020440..39051228 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005209221.5 → XP_005209278.1  protein FAM193B isoform X5

      Conserved Domains (1) summary
      pfam15914
      Location:767 → 817
      FAM193_C; FAM193 family C-terminal

    2. XM_005209217.3 → XP_005209274.1  protein FAM193B isoform X2

      Conserved Domains (1) summary
      pfam15914
      Location:847 → 897
      FAM193_C; FAM193 family C-terminal

    3. XM_005209216.5 → XP_005209273.1  protein FAM193B isoform X1

      UniProtKB/TrEMBL
      A0A452DIL0
      Related
      ENSBTAP00000020211.6, ENSBTAT00000020211.7
      Conserved Domains (1) summary
      pfam15914
      Location:848 → 898
      FAM193_C; FAM193 family C-terminal

    4. XM_005209218.5 → XP_005209275.1  protein FAM193B isoform X3

      Conserved Domains (3) summary
      pfam05518
      Location:158 → 253
      Totivirus_coat; Totivirus coat protein
      pfam15914
      Location:798 → 848
      FAM193_C; FAM193 family C-terminal
      cl26464
      Location:540 → 772
      Atrophin-1; Atrophin-1 family

    5. XM_010807165.4 → XP_010805467.1  protein FAM193B isoform X6

      See identical proteins and their annotated locations for XP_010805467.1

      Conserved Domains (3) summary
      pfam05518
      Location:95 → 190
      Totivirus_coat; Totivirus coat protein
      pfam15914
      Location:735 → 785
      FAM193_C; FAM193 family C-terminal
      cl26464
      Location:477 → 709
      Atrophin-1; Atrophin-1 family

    6. XM_059888320.1 → XP_059744303.1  protein FAM193B isoform X7

    7. XM_005209220.5 → XP_005209277.1  protein FAM193B isoform X4

      Related
      ENSBTAP00000095446.1, ENSBTAT00000117883.1
      Conserved Domains (3) summary
      pfam05518
      Location:130 → 225
      Totivirus_coat; Totivirus coat protein
      pfam15914
      Location:770 → 820
      FAM193_C; FAM193 family C-terminal
      cl26464
      Location:512 → 744
      Atrophin-1; Atrophin-1 family

    8. XM_059888319.1 → XP_059744302.1  protein FAM193B isoform X6

    9. XM_059888318.1 → XP_059744301.1  protein FAM193B isoform X6

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A7MB40.1 GenPept UniProtKB/Swiss-Prot:A7MB40

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