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    BATF3 basic leucine zipper ATF-like transcription factor 3 [ Bos taurus (cattle) ]

    Gene ID: 535008, updated on 5-Mar-2024

    Summary

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    Official Symbol
    BATF3provided by VGNC
    Official Full Name
    basic leucine zipper ATF-like transcription factor 3provided by VGNC
    Primary source
    VGNC:VGNC:26427
    See related
    Ensembl:ENSBTAG00000011982
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 16
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 16 NC_037343.1 (70845119..70859150)

    Chromosome 16 - NC_037343.1Genomic Context describing neighboring genes Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene TatD DNase domain containing 3 Neighboring gene NSL1 component of MIS12 kinetochore complex Neighboring gene tigger transposable element-derived protein 1-like Neighboring gene golgi associated RAB2 interactor family member 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037343.1 Chromosome 16 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    basic leucine zipper transcriptional factor ATF-like 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001193235.2 → NP_001180164.2  basic leucine zipper transcriptional factor ATF-like 3

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000016
      UniProtKB/TrEMBL
      E1BEL2
      Related
      ENSBTAP00000015898.6, ENSBTAT00000015898.6
      Conserved Domains (1) summary
      cd14701
      Location:35 → 92
      bZIP_BATF; Basic leucine zipper (bZIP) domain of BATF proteins: a DNA-binding and dimerization domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037343.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      70845119..70859150
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059875447.1 → XP_059731430.1  basic leucine zipper transcriptional factor ATF-like 3 isoform X1

    2. XM_005217378.5 → XP_005217435.2  basic leucine zipper transcriptional factor ATF-like 3 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1MQN1
      Related
      ENSBTAP00000072080.1, ENSBTAT00000075202.2
      Conserved Domains (1) summary
      cd14701
      Location:31 → 88
      bZIP_BATF; Basic leucine zipper (bZIP) domain of BATF proteins: a DNA-binding and dimerization domain

    3. XM_005217377.5 → XP_005217434.2  basic leucine zipper transcriptional factor ATF-like 3 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1NBH3
      Conserved Domains (1) summary
      cd14701
      Location:32 → 89
      bZIP_BATF; Basic leucine zipper (bZIP) domain of BATF proteins: a DNA-binding and dimerization domain
    Nucleotide Protein Strain
    Heading Accession and Version

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