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    SP110 SP110 nuclear body protein [ Bos taurus (cattle) ]

    Gene ID: 515204, updated on 5-Mar-2024

    Summary

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    Official Symbol
    SP110provided by VGNC
    Official Full Name
    SP110 nuclear body proteinprovided by VGNC
    Primary source
    VGNC:VGNC:106948
    See related
    Ensembl:ENSBTAG00000015752
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human all
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 2 NC_037329.1 (118183281..118232896, complement)

    Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC787234 Neighboring gene serine/arginine-rich splicing factor 9-like Neighboring gene nuclear body protein SP140-like protein Neighboring gene uncharacterized LOC132343343 Neighboring gene SP100 nuclear antigen

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037329.1 Chromosome 2 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SP110 as a novel susceptibility gene for Mycobacterium avium subspecies paratuberculosis infection in cattle. Ruiz-Larrañaga O, et al. J Dairy Sci, 2010 Dec. PMID 21094769

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. SP110 as a novel susceptibility gene for Mycobacterium avium subspecies paratuberculosis infection in cattle.
      Title: SP110 as a novel susceptibility gene for Mycobacterium avium subspecies paratuberculosis infection in cattle.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sp110 nuclear body protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037329.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      118183281..118232896 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015459855.3 → XP_015315341.1  sp110 nuclear body protein isoform X5

      UniProtKB/TrEMBL
      A0A0N6XEM3, E1BAP3
      Related
      ENSBTAP00000020915.6, ENSBTAT00000020915.6
      Conserved Domains (4) summary
      cd15626
      Location:560 → 601
      PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
      pfam01342
      Location:468 → 543
      SAND; SAND domain
      pfam03172
      Location:8 → 100
      Sp100; Sp100 domain
      cl02556
      Location:626 → 723
      Bromodomain; Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.

    2. XM_005203019.5 → XP_005203076.1  sp110 nuclear body protein isoform X7

      See identical proteins and their annotated locations for XP_005203076.1

      UniProtKB/TrEMBL
      A0A0N6XEM3
      Related
      ENSBTAP00000095702.1, ENSBTAT00000131460.1
      Conserved Domains (4) summary
      cd15626
      Location:582 → 623
      PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
      pfam01342
      Location:490 → 565
      SAND; SAND domain
      pfam03172
      Location:8 → 100
      Sp100; Sp100 domain
      cl02556
      Location:648 → 698
      Bromodomain; Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.

    3. XM_003585776.6 → XP_003585824.2  sp110 nuclear body protein isoform X3

      See identical proteins and their annotated locations for XP_003585824.2

      UniProtKB/TrEMBL
      A0A0N6XEM3
      Related
      ENSBTAP00000096520.1, ENSBTAT00000136007.1
      Conserved Domains (4) summary
      cd15626
      Location:582 → 623
      PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
      pfam01342
      Location:490 → 565
      SAND; SAND domain
      pfam03172
      Location:8 → 100
      Sp100; Sp100 domain
      cl02556
      Location:648 → 745
      Bromodomain; Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.

    4. XM_005203018.5 → XP_005203075.1  sp110 nuclear body protein isoform X6

      See identical proteins and their annotated locations for XP_005203075.1

      UniProtKB/TrEMBL
      A0A0N6XEM3
      Conserved Domains (4) summary
      cd15626
      Location:532 → 573
      PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
      pfam01342
      Location:440 → 515
      SAND; SAND domain
      pfam03172
      Location:8 → 100
      Sp100; Sp100 domain
      cl02556
      Location:598 → 672
      Bromodomain; Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.

    5. XM_005203017.5 → XP_005203074.1  sp110 nuclear body protein isoform X4

      See identical proteins and their annotated locations for XP_005203074.1

      UniProtKB/TrEMBL
      A0A0N6XEM3
      Conserved Domains (4) summary
      cd15626
      Location:560 → 601
      PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
      pfam01342
      Location:468 → 543
      SAND; SAND domain
      pfam03172
      Location:8 → 100
      Sp100; Sp100 domain
      cl02556
      Location:626 → 700
      Bromodomain; Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.

    6. XM_005203016.5 → XP_005203073.1  sp110 nuclear body protein isoform X2

      See identical proteins and their annotated locations for XP_005203073.1

      UniProtKB/TrEMBL
      A0A0N6XEM3
      Conserved Domains (4) summary
      cd15626
      Location:581 → 622
      PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
      pfam01342
      Location:490 → 565
      SAND; SAND domain
      pfam03172
      Location:8 → 100
      Sp100; Sp100 domain
      cl02556
      Location:647 → 721
      Bromodomain; Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.

    7. XM_005203020.5 → XP_005203077.1  sp110 nuclear body protein isoform X1

      See identical proteins and their annotated locations for XP_005203077.1

      UniProtKB/TrEMBL
      A0A0N6XEM3
      Conserved Domains (4) summary
      cd15626
      Location:582 → 623
      PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
      pfam01342
      Location:490 → 565
      SAND; SAND domain
      pfam03172
      Location:8 → 100
      Sp100; Sp100 domain
      cl02556
      Location:648 → 722
      Bromodomain; Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
    Nucleotide Protein Strain
    Heading Accession and Version

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