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    PHF20L1 PHD finger protein 20 like 1 [ Bos taurus (cattle) ]

    Gene ID: 511990, updated on 3-Apr-2024

    Summary

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    Official Symbol
    PHF20L1provided by VGNC
    Official Full Name
    PHD finger protein 20 like 1provided by VGNC
    Primary source
    VGNC:VGNC:32820
    See related
    BGD:BT23840; Ensembl:ENSBTAG00000006869
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 14
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 14 NC_037341.1 (8462963..8543031, complement)

    Chromosome 14 - NC_037341.1Genomic Context describing neighboring genes Neighboring gene cellular communication network factor 4 Neighboring gene thyroglobulin Neighboring gene Src like adaptor Neighboring gene transmembrane protein 71 Neighboring gene dynein axonemal assembly factor 11 Neighboring gene transfer RNA cysteine (anticodon ACA)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037341.1 Chromosome 14 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC148600

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of NSL complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PHD finger protein 20-like protein 1
    Names
    tudor domain-containing protein PHF20L1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001372142.1 → NP_001359071.1  PHD finger protein 20-like protein 1

      Status: VALIDATED

      Source sequence(s)
      NKLS02000014
      UniProtKB/TrEMBL
      A0A3Q1M6G1
      Related
      ENSBTAP00000009033.7, ENSBTAT00000009033.7
      Conserved Domains (4) summary
      cd04508
      Location:90 → 135
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      cd15633
      Location:681 → 726
      PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
      pfam16660
      Location:319 → 384
      PHD20L1_u1; PHD finger protein 20-like protein 1
      cl17705
      Location:3 → 68
      MBT; mbt repeat

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037341.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      8462963..8543031 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005215332.5 → XP_005215389.1  PHD finger protein 20-like protein 1 isoform X6

      See identical proteins and their annotated locations for XP_005215389.1

      UniProtKB/TrEMBL
      A0A3Q1M6G1
      Related
      ENSBTAP00000069319.2, ENSBTAT00000086671.2
      Conserved Domains (5) summary
      cd04508
      Location:90 → 135
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      cd15633
      Location:655 → 700
      PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
      pfam12618
      Location:184 → 292
      DUF3776; Protein of unknown function (DUF3776)
      pfam16660
      Location:293 → 358
      PHD20L1_u1; PHD finger protein 20-like protein 1
      cl17705
      Location:3 → 68
      MBT; mbt repeat

    2. XM_005215333.5 → XP_005215390.1  PHD finger protein 20-like protein 1 isoform X8

      UniProtKB/TrEMBL
      A0A3Q1M6G1
      Conserved Domains (5) summary
      cd04508
      Location:90 → 135
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      cd15633
      Location:654 → 699
      PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
      pfam12618
      Location:184 → 291
      DUF3776; Protein of unknown function (DUF3776)
      pfam16660
      Location:292 → 357
      PHD20L1_u1; PHD finger protein 20-like protein 1
      cl17705
      Location:3 → 68
      MBT; mbt repeat

    3. XM_059893190.1 → XP_059749173.1  PHD finger protein 20-like protein 1 isoform X7

    4. XM_005215331.5 → XP_005215388.1  PHD finger protein 20-like protein 1 isoform X6

      See identical proteins and their annotated locations for XP_005215388.1

      UniProtKB/TrEMBL
      A0A3Q1M6G1
      Conserved Domains (5) summary
      cd04508
      Location:90 → 135
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      cd15633
      Location:655 → 700
      PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
      pfam12618
      Location:184 → 292
      DUF3776; Protein of unknown function (DUF3776)
      pfam16660
      Location:293 → 358
      PHD20L1_u1; PHD finger protein 20-like protein 1
      cl17705
      Location:3 → 68
      MBT; mbt repeat

    5. XM_005215329.5 → XP_005215386.1  PHD finger protein 20-like protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A3Q1M6G1
      Conserved Domains (5) summary
      cd04508
      Location:90 → 135
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      cd15633
      Location:680 → 725
      PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
      pfam12618
      Location:210 → 317
      DUF3776; Protein of unknown function (DUF3776)
      pfam16660
      Location:318 → 383
      PHD20L1_u1; PHD finger protein 20-like protein 1
      cl17705
      Location:3 → 68
      MBT; mbt repeat

    6. XM_005215328.5 → XP_005215385.1  PHD finger protein 20-like protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1M6G1
      Conserved Domains (5) summary
      cd04508
      Location:90 → 135
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      cd15633
      Location:680 → 725
      PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
      pfam12618
      Location:210 → 317
      DUF3776; Protein of unknown function (DUF3776)
      pfam16660
      Location:318 → 383
      PHD20L1_u1; PHD finger protein 20-like protein 1
      cl17705
      Location:3 → 68
      MBT; mbt repeat

    7. XM_005215334.5 → XP_005215391.1  PHD finger protein 20-like protein 1 isoform X9

      UniProtKB/TrEMBL
      A0A3Q1M6G1
      Conserved Domains (5) summary
      cd04508
      Location:90 → 135
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      cd15633
      Location:626 → 671
      PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
      pfam12618
      Location:210 → 318
      DUF3776; Protein of unknown function (DUF3776)
      pfam16660
      Location:319 → 384
      PHD20L1_u1; PHD finger protein 20-like protein 1
      cl17705
      Location:3 → 68
      MBT; mbt repeat

    8. XM_005215327.5 → XP_005215384.1  PHD finger protein 20-like protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1M6G1, E1BGZ9
      Conserved Domains (5) summary
      cd04508
      Location:90 → 135
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      cd15633
      Location:681 → 726
      PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
      pfam12618
      Location:210 → 318
      DUF3776; Protein of unknown function (DUF3776)
      pfam16660
      Location:319 → 384
      PHD20L1_u1; PHD finger protein 20-like protein 1
      cl17705
      Location:3 → 68
      MBT; mbt repeat

    9. XM_005215325.5 → XP_005215382.1  PHD finger protein 20-like protein 1 isoform X1

      See identical proteins and their annotated locations for XP_005215382.1

      UniProtKB/TrEMBL
      A0A3Q1M6G1
      Conserved Domains (4) summary
      cd04508
      Location:90 → 135
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      cd15633
      Location:681 → 726
      PHD_PHF20L1; PHD finger found in PHD finger protein 20-like protein 1 (P20L1)
      pfam16660
      Location:319 → 384
      PHD20L1_u1; PHD finger protein 20-like protein 1
      cl17705
      Location:3 → 68
      MBT; mbt repeat

    10. XM_059893188.1 → XP_059749171.1  PHD finger protein 20-like protein 1 isoform X5

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001082432.2: Suppressed sequence

      Description
      NM_001082432.2: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A2VE56.1 GenPept UniProtKB/Swiss-Prot:A2VE56

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