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    RPF2 ribosome production factor 2 homolog [ Bos taurus (cattle) ]

    Gene ID: 511294, updated on 3-Apr-2024

    Summary

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    Official Symbol
    RPF2provided by VGNC
    Official Full Name
    ribosome production factor 2 homologprovided by VGNC
    Primary source
    VGNC:VGNC:34103
    See related
    BGD:BT18008; Ensembl:ENSBTAG00000016584
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    BXDC1
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 9
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 9 NC_037336.1 (39322753..39361557, complement)

    Chromosome 9 - NC_037336.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 16 member 10 Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene U6 spliceosomal RNA Neighboring gene heterogeneous nuclear ribonucleoprotein A1-like Neighboring gene general transcription factor IIIC subunit 6 Neighboring gene adenosylmethionine decarboxylase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037336.1 Chromosome 9 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC134144

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribosomal large subunit assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ribosome production factor 2 homolog
    Names
    brix domain containing 1
    brix domain-containing protein 1
    ribosome biogenesis protein RPF2 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001046083.2 → NP_001039548.1  ribosome production factor 2 homolog

      See identical proteins and their annotated locations for NP_001039548.1

      Status: PROVISIONAL

      Source sequence(s)
      BC110138
      UniProtKB/Swiss-Prot
      Q2YDN6
      UniProtKB/TrEMBL
      A0A3Q1MQQ1
      Related
      ENSBTAP00000022060.4, ENSBTAT00000022060.5
      Conserved Domains (1) summary
      cl00935
      Location:6 → 298
      Brix; Brix domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037336.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      39322753..39361557 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010808429.4 → XP_010806731.1  ribosome production factor 2 homolog isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MQQ1
      Related
      ENSBTAP00000091660.1, ENSBTAT00000114803.1
      Conserved Domains (1) summary
      cl00935
      Location:3 → 235
      Brix; Brix domain
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2YDN6.1 GenPept UniProtKB/Swiss-Prot:Q2YDN6

    Gene LinkOut

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