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    TRPV2 transient receptor potential cation channel subfamily V member 2 [ Bos taurus (cattle) ]

    Gene ID: 507664, updated on 5-Mar-2024

    Summary

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    Official Symbol
    TRPV2provided by VGNC
    Official Full Name
    transient receptor potential cation channel subfamily V member 2provided by VGNC
    Primary source
    VGNC:VGNC:36398
    See related
    BGD:BT15730; Ensembl:ENSBTAG00000003014
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 19
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 19 NC_037346.1 (33209589..33230747, complement)

    Chromosome 19 - NC_037346.1Genomic Context describing neighboring genes Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene zinc finger protein 287 Neighboring gene leucine rich repeat containing 75A Neighboring gene small nucleolar RNA SNORD65 Neighboring gene small nucleolar RNA SNORD49 Neighboring gene small nucleolar RNA SNORD49 Neighboring gene uncharacterized LOC101907886 Neighboring gene enhancer of rudimentary homolog pseudogene Neighboring gene ubiquitin B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037346.1 Chromosome 19 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TRPV2-spike protein interaction mediates the entry of SARS-CoV-2 into macrophages in febrile conditions. Xu J, et al. Theranostics, 2021. PMID 34158856, Free PMC Article
    2. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    3. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    4. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. TRPV2-spike protein interaction mediates the entry of SARS-CoV-2 into macrophages in febrile conditions.
      Title: TRPV2-spike protein interaction mediates the entry of SARS-CoV-2 into macrophages in febrile conditions.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium ion import across plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transient receptor potential cation channel subfamily V member 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024493.1 → NP_001019664.1  transient receptor potential cation channel subfamily V member 2

      See identical proteins and their annotated locations for NP_001019664.1

      Status: PROVISIONAL

      Source sequence(s)
      BT020737
      UniProtKB/TrEMBL
      Q5EA32
      Related
      ENSBTAP00000003922.4, ENSBTAT00000003922.6
      Conserved Domains (3) summary
      cd00204
      Location:163 → 310
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      TIGR00870
      Location:37 → 753
      trp; transient-receptor-potential calcium channel protein
      sd00045
      Location:162 → 193
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037346.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      33209589..33230747 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059877860.1 → XP_059733843.1  transient receptor potential cation channel subfamily V member 2 isoform X1

      UniProtKB/TrEMBL
      Q5EA32

    2. XM_059877859.1 → XP_059733842.1  transient receptor potential cation channel subfamily V member 2 isoform X1

      UniProtKB/TrEMBL
      Q5EA32

    3. XM_059877861.1 → XP_059733844.1  transient receptor potential cation channel subfamily V member 2 isoform X1

      UniProtKB/TrEMBL
      Q5EA32

    4. XM_059877858.1 → XP_059733841.1  transient receptor potential cation channel subfamily V member 2 isoform X1

      UniProtKB/TrEMBL
      Q5EA32
    Nucleotide Protein Strain
    Heading Accession and Version

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