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    CPSF7 cleavage and polyadenylation specific factor 7 [ Bos taurus (cattle) ]

    Gene ID: 504925, updated on 5-Mar-2024

    Summary

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    Official Symbol
    CPSF7provided by VGNC
    Official Full Name
    cleavage and polyadenylation specific factor 7provided by VGNC
    Primary source
    VGNC:VGNC:27675
    See related
    BGD:BT17703; Ensembl:ENSBTAG00000015263
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 29
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 29 NC_037356.1 (39898982..39921780, complement)

    Chromosome 29 - NC_037356.1Genomic Context describing neighboring genes Neighboring gene triokinase and FMN cyclase Neighboring gene cytochrome b561 family member A3 Neighboring gene transmembrane protein 138 Neighboring gene transmembrane protein 216 Neighboring gene succinate dehydrogenase complex assembly factor 2 Neighboring gene uncharacterized LOC132344202 Neighboring gene microRNA mir-2405

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037356.1 Chromosome 29 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • FLJ12529

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA alternative polyadenylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mRNA cleavage and polyadenylation specificity factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cleavage and polyadenylation specificity factor subunit 7
    Names
    cleavage and polyadenylation specific factor 7, 59kDa
    pre-mRNA cleavage factor I, 59 kDa subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037356.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      39898982..39921780 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002699281.7 → XP_002699327.1  cleavage and polyadenylation specificity factor subunit 7 isoform X2

      See identical proteins and their annotated locations for XP_002699327.1

      UniProtKB/TrEMBL
      F1MU62
      Conserved Domains (1) summary
      cd12644
      Location:81 → 170
      RRM_CFIm59; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 59 kDa subunit (CFIm59 or CPSF7) and similar proteins

    2. XM_003588033.6 → XP_003588081.1  cleavage and polyadenylation specificity factor subunit 7 isoform X1

      See identical proteins and their annotated locations for XP_003588081.1

      UniProtKB/TrEMBL
      F1MU62
      Conserved Domains (2) summary
      COG0724
      Location:50 → 231
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12644
      Location:81 → 170
      RRM_CFIm59; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 59 kDa subunit (CFIm59 or CPSF7) and similar proteins

    3. XM_024987565.2 → XP_024843333.1  cleavage and polyadenylation specificity factor subunit 7 isoform X2

      Conserved Domains (1) summary
      cd12644
      Location:81 → 170
      RRM_CFIm59; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 59 kDa subunit (CFIm59 or CPSF7) and similar proteins

    4. XM_005226959.5 → XP_005227016.1  cleavage and polyadenylation specificity factor subunit 7 isoform X1

      See identical proteins and their annotated locations for XP_005227016.1

      UniProtKB/TrEMBL
      F1MU62
      Conserved Domains (2) summary
      COG0724
      Location:50 → 231
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12644
      Location:81 → 170
      RRM_CFIm59; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 59 kDa subunit (CFIm59 or CPSF7) and similar proteins

    5. XM_059883082.1 → XP_059739065.1  cleavage and polyadenylation specificity factor subunit 7 isoform X1

      UniProtKB/TrEMBL
      F1MU62
      Related
      ENSBTAP00000020300.6, ENSBTAT00000020300.6
    Nucleotide Protein Strain
    Heading Accession and Version

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