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    CHID1 chitinase domain containing 1 [ Bos taurus (cattle) ]

    Gene ID: 504781, updated on 3-Apr-2024

    Summary

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    Official Symbol
    CHID1provided by VGNC
    Official Full Name
    chitinase domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:27294
    See related
    BGD:BT21698; Ensembl:ENSBTAG00000009899
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See CHID1 in Genome Data Viewer
    Location:
    chromosome: 29
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 29 NC_037356.1 (50492793..50511865)

    Chromosome 29 - NC_037356.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100850574 Neighboring gene adaptor related protein complex 2 subunit alpha 2 Neighboring gene uncharacterized LOC132344226 Neighboring gene microRNA mir-2409 Neighboring gene tetraspanin 4 Neighboring gene RNA polymerase II, I and III subunit L

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037356.1 Chromosome 29 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC140688

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oligosaccharide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chitinase domain-containing protein 1
    NP_001015515.1
    XP_024842771.1
    XP_024842772.1
    XP_024842774.1
    XP_059738764.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001015515.1 → NP_001015515.1  chitinase domain-containing protein 1 precursor

      See identical proteins and their annotated locations for NP_001015515.1

      Status: PROVISIONAL

      Source sequence(s)
      BT021170
      UniProtKB/Swiss-Prot
      Q17QB6, Q5EAB4
      UniProtKB/TrEMBL
      A0A452DIF4
      Related
      ENSBTAP00000050339.2, ENSBTAT00000054178.3
      Conserved Domains (1) summary
      cd02876
      Location:77 → 393
      GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037356.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      50492793..50511865
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059882781.1 → XP_059738764.1  chitinase domain-containing protein 1 isoform X1

      UniProtKB/Swiss-Prot
      Q17QB6, Q5EAB4

    2. XM_024987003.2 → XP_024842771.1  chitinase domain-containing protein 1 isoform X1

      UniProtKB/Swiss-Prot
      Q17QB6, Q5EAB4
      UniProtKB/TrEMBL
      A0A452DIF4
      Conserved Domains (1) summary
      cd02876
      Location:77 → 393
      GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...

    3. XM_024987006.2 → XP_024842774.1  chitinase domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A452DIF4
      Conserved Domains (1) summary
      cd02876
      Location:77 → 366
      GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...

    4. XM_024987004.2 → XP_024842772.1  chitinase domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A452DIF4
      Conserved Domains (1) summary
      cd02876
      Location:77 → 366
      GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5EAB4.1 GenPept UniProtKB/Swiss-Prot:Q5EAB4

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