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    arfip1 ADP ribosylation factor interacting protein 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 496949, updated on 5-Mar-2024

    Summary

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    Official Symbol
    arfip1provided by Xenbase
    Official Full Name
    ADP ribosylation factor interacting protein 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-951005
    See related
    Ensembl:ENSXETG00000001840
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (55315156..55389127, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (46086658..46162260, complement)

    Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene tripartite motif containing 2 Neighboring gene uncharacterized LOC105946244 Neighboring gene FH2 domain containing 1 Neighboring gene transmembrane protein 154 Neighboring gene excision repair cross-complementation group 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables protein domain specific binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    arfaptin-1
    Names
    ADP-ribosylation factor interacting protein 1 (arfaptin 1)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001011459.2 → NP_001011459.1  arfaptin-1

      See identical proteins and their annotated locations for NP_001011459.1

      Status: PROVISIONAL

      Source sequence(s)
      BC088571
      UniProtKB/TrEMBL
      Q28F10, Q5I095
      Conserved Domains (1) summary
      cd07660
      Location:125 → 325
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      55315156..55389127 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018092875.2 → XP_017948364.2  arfaptin-1 isoform X5

      UniProtKB/TrEMBL
      A0A8J0T1V3, Q28F10
      Conserved Domains (1) summary
      cd07660
      Location:109 → 309
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    2. XM_012961385.3 → XP_012816839.2  arfaptin-1 isoform X1

      UniProtKB/TrEMBL
      A0A6I8QMT3, Q28F10
      Related
      ENSXETP00000069824.2, ENSXETT00000089436.2
      Conserved Domains (1) summary
      cd07660
      Location:179 → 379
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    3. XM_012961374.3 → XP_012816828.2  arfaptin-1 isoform X2

      UniProtKB/TrEMBL
      A0A6I8Q0X1, Q28F10
      Related
      ENSXETP00000062708.3, ENSXETT00000065453.3
      Conserved Domains (1) summary
      cd07660
      Location:157 → 357
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    4. XM_031899365.1 → XP_031755225.1  arfaptin-1 isoform X3

      UniProtKB/TrEMBL
      F7AUS3, Q28F10
      Related
      ENSXETP00000003879.5, ENSXETT00000003879.5
      Conserved Domains (1) summary
      cd07660
      Location:147 → 347
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    5. XM_012961396.3 → XP_012816850.2  arfaptin-1 isoform X4

      UniProtKB/TrEMBL
      Q28F10, Q5I095
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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