U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    cltb clathrin, light chain B [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 496489, updated on 5-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    cltbprovided by Xenbase
    Official Full Name
    clathrin, light chain Bprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-954481
    See related
    Ensembl:ENSXETG00000006744
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (47552014..47571920)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (38056651..38077827)

    Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene ring finger protein 44 Neighboring gene uncharacterized LOC105946815 Neighboring gene Fas associated factor family member 2 Neighboring gene uncharacterized XB5729191 Neighboring gene HIG1 hypoxia inducible domain family member 2A

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables structural molecule activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of clathrin coat of coated pit IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of clathrin coat of trans-Golgi network vesicle IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in clathrin-coated pit IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasmic vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    clathrin light chain B
    Names
    clathrin, light chain (Lcb)
    clathrin, light polypeptide (Lcb)

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001011078.2 → NP_001011078.1  clathrin light chain B

      See identical proteins and their annotated locations for NP_001011078.1

      Status: PROVISIONAL

      Source sequence(s)
      CR761042
      UniProtKB/TrEMBL
      A0A6I8S0N7, F6WC87, Q5XGH5
      Related
      ENSXETP00000014727.4, ENSXETT00000014727.5
      Conserved Domains (1) summary
      pfam01086
      Location:1 → 202
      Clathrin_lg_ch; Clathrin light chain

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      47552014..47571920
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012958902.3 → XP_012814356.1  clathrin light chain B isoform X1

      UniProtKB/TrEMBL
      A0A6I8S0N7, A0A803JHX4
      Related
      ENSXETP00000107523.1, ENSXETT00000112132.1
      Conserved Domains (1) summary
      pfam01086
      Location:1 → 219
      Clathrin_lg_ch; Clathrin light chain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.