gfus.1 GDP-L-fucose synthase, tandem duplicate 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: gfus.1provided by ZNC
Official Full Name: GDP-L-fucose synthase, tandem duplicate 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-040722-1
See related: Ensembl:ENSDARG00000039666 AllianceGenome:ZFIN:ZDB-GENE-040722-1
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: gfus; tsta3; zgc:101805; si:dkey-235d18none
Summary: Predicted to enable GDP-L-fucose synthase activity. Predicted to be involved in 'de novo' GDP-L-fucose biosynthetic process. Predicted to act upstream of or within nucleotide-sugar biosynthetic process. Orthologous to human GFUS (GDP-L-fucose synthase). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 20

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	20	NC_007131.7 (52458765..52488233)
105	previous assembly	GRCz10 (GCF_000002035.5)	20	NC_007131.6 (52653149..52682617)

Chromosome 20 - NC_007131.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables GDP-L-fucose synthase activity	IBA Inferred from Biological aspect of Ancestor more info
enables GDP-L-fucose synthase activity	IEA Inferred from Electronic Annotation more info
enables oxidoreductase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in 'de novo' GDP-L-fucose biosynthetic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within nucleotide-sugar biosynthetic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info

General protein information

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Preferred Names: GDP-L-fucose synthase

Names: tissue specific transplantation antigen P35B

NP_001008620.1

EC 1.1.1.271

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001008620.1 → NP_001008620.1 GDP-L-fucose synthase

See identical proteins and their annotated locations for NP_001008620.1

Status: PROVISIONAL

Source sequence(s)

BC086741

UniProtKB/TrEMBL

B2GNW2, Q5SPD5

Related

ENSDARP00000057979.4, ENSDART00000057980.6

Conserved Domains (2) summary

cd05239
Location:6 → 309

GDP_FS_SDR_e; GDP-fucose synthetase, extended (e) SDRs

pfam01370
Location:7 → 242

Epimerase; NAD dependent epimerase/dehydratase family