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    SP6 Sp6 transcription factor [ Canis lupus familiaris (dog) ]

    Gene ID: 491047, updated on 5-Mar-2024

    Summary

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    Official Symbol
    SP6provided by VGNC
    Official Full Name
    Sp6 transcription factorprovided by VGNC
    Primary source
    VGNC:VGNC:46689
    See related
    Ensembl:ENSCAFG00845015746
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 9
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 9 NC_051813.1 (24971025..24979266, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 9 NC_006591.4 (23644007..23652241, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 9 NC_049230.1 (24128664..24136901, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 9 NC_049269.1 (23741134..23749372, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 9 NC_049750.1 (24001979..24010212, complement)

    Chromosome 9 - NC_051813.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 46 Neighboring gene secernin 2 Neighboring gene uncharacterized LOC111097363 Neighboring gene uncharacterized LOC102154875 Neighboring gene Sp2 transcription factor Neighboring gene pyridoxamine 5'-phosphate oxidase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor Sp6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051813.1 Reference ROS_Cfam_1.0

      Range
      24971025..24979266 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038676704.1 → XP_038532632.1  transcription factor Sp6

      UniProtKB/TrEMBL
      A0A8C0LFW2, A0A8C0QD95, A0A8I3RYZ2
      Conserved Domains (3) summary
      COG5048
      Location:261 → 336
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:259 → 278
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd22544
      Location:1 → 255
      SP6_N; N-terminal domain of transcription factor Specificity Protein (SP) 6

    2. XM_038676703.1 → XP_038532631.1  transcription factor Sp6

      UniProtKB/TrEMBL
      A0A8C0LFW2, A0A8C0QD95, A0A8I3RYZ2
      Related
      ENSCAFP00845022064.1, ENSCAFT00845028044.1
      Conserved Domains (3) summary
      COG5048
      Location:261 → 336
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:259 → 278
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd22544
      Location:1 → 255
      SP6_N; N-terminal domain of transcription factor Specificity Protein (SP) 6

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049269.1 Alternate UMICH_Zoey_3.1

      Range
      23741134..23749372 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038485757.1 → XP_038341685.1  transcription factor Sp6

      Conserved Domains (3) summary
      COG5048
      Location:261 → 336
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:259 → 278
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd22544
      Location:1 → 255
      SP6_N; N-terminal domain of transcription factor Specificity Protein (SP) 6

    2. XM_038485756.1 → XP_038341684.1  transcription factor Sp6

      Conserved Domains (3) summary
      COG5048
      Location:261 → 336
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:259 → 278
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd22544
      Location:1 → 255
      SP6_N; N-terminal domain of transcription factor Specificity Protein (SP) 6

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049750.1 Alternate UNSW_CanFamBas_1.0

      Range
      24001979..24010212 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038611507.1 → XP_038467435.1  transcription factor Sp6

      Conserved Domains (3) summary
      COG5048
      Location:261 → 336
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:259 → 278
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd22544
      Location:1 → 255
      SP6_N; N-terminal domain of transcription factor Specificity Protein (SP) 6

    2. XM_038611505.1 → XP_038467433.1  transcription factor Sp6

      Conserved Domains (3) summary
      COG5048
      Location:261 → 336
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:259 → 278
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd22544
      Location:1 → 255
      SP6_N; N-terminal domain of transcription factor Specificity Protein (SP) 6

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049230.1 Alternate UU_Cfam_GSD_1.0

      Range
      24128664..24136901 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038547530.1 → XP_038403458.1  transcription factor Sp6

      UniProtKB/TrEMBL
      A0A8C0LFW2, A0A8C0QD95, A0A8I3RYZ2
      Conserved Domains (3) summary
      COG5048
      Location:261 → 336
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:259 → 278
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd22544
      Location:1 → 255
      SP6_N; N-terminal domain of transcription factor Specificity Protein (SP) 6

    2. XM_038547529.1 → XP_038403457.1  transcription factor Sp6

      UniProtKB/TrEMBL
      A0A8C0LFW2, A0A8C0QD95, A0A8I3RYZ2
      Conserved Domains (3) summary
      COG5048
      Location:261 → 336
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:259 → 278
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd22544
      Location:1 → 255
      SP6_N; N-terminal domain of transcription factor Specificity Protein (SP) 6

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006591.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      23644007..23652241 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022423055.2 → XP_022278763.1  transcription factor Sp6

      UniProtKB/TrEMBL
      A0A8C0LFW2, A0A8C0QD95, A0A8I3RYZ2
      Conserved Domains (3) summary
      COG5048
      Location:261 → 336
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:259 → 278
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd22544
      Location:1 → 255
      SP6_N; N-terminal domain of transcription factor Specificity Protein (SP) 6

    2. XM_005624607.3 → XP_005624664.1  transcription factor Sp6

      UniProtKB/TrEMBL
      A0A8C0LFW2, A0A8C0QD95, A0A8I3RYZ2
      Conserved Domains (3) summary
      COG5048
      Location:261 → 336
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:259 → 278
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd22544
      Location:1 → 255
      SP6_N; N-terminal domain of transcription factor Specificity Protein (SP) 6
    Nucleotide Protein
    Heading Accession and Version

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