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    FGFR1OP2 FGFR1 oncogene partner 2 [ Canis lupus familiaris (dog) ]

    Gene ID: 486626, updated on 5-Mar-2024

    Summary

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    Official Symbol
    FGFR1OP2provided by VGNC
    Official Full Name
    FGFR1 oncogene partner 2provided by VGNC
    Primary source
    VGNC:VGNC:40858
    See related
    Ensembl:ENSCAFG00845025406
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See FGFR1OP2 in Genome Data Viewer
    Location:
    chromosome: 27
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 27 NC_051831.1 (20866935..20899331, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 27 NC_006609.4 (25702442..25713885)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 27 NC_049248.1 (25865306..25876753)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 27 NC_049287.1 (20680184..20691626, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 27 NC_049768.1 (20702482..20713929, complement)

    Chromosome 27 - NC_051831.1Genomic Context describing neighboring genes Neighboring gene transmembrane 7 superfamily member 3 Neighboring gene U2 spliceosomal RNA Neighboring gene ribonuclease P protein subunit p38-like Neighboring gene integrator complex subunit 13 Neighboring gene teratocarcinoma-derived growth factor 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Exonic SINE insertion in STK38L causes canine early retinal degeneration (erd). Goldstein O, et al. Genomics, 2010 Dec. PMID 20887780, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in response to wounding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    FGFR1 oncogene partner 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001197313.1 → NP_001184242.1  FGFR1 oncogene partner 2

      See identical proteins and their annotated locations for NP_001184242.1

      Status: PROVISIONAL

      Source sequence(s)
      GU811150
      UniProtKB/TrEMBL
      A0A8C0KJ80, A0A8C0Z3U2, E2QV81
      Conserved Domains (1) summary
      pfam05769
      Location:2 → 183
      SIKE; SIKE family

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051831.1 Reference ROS_Cfam_1.0

      Range
      20866935..20899331 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038437804.1 → XP_038293732.1  FGFR1 oncogene partner 2 isoform X1

      UniProtKB/TrEMBL
      A0A8C0KIU1, A0A8C0PI13, A0A8I3PL50
      Conserved Domains (1) summary
      pfam05769
      Location:2 → 221
      SIKE; SIKE family

    2. XM_038437803.1 → XP_038293731.1  FGFR1 oncogene partner 2 isoform X1

      UniProtKB/TrEMBL
      A0A8C0KIU1, A0A8C0PI13, A0A8I3PL50
      Related
      ENSCAFP00845035165.1, ENSCAFT00845044870.1
      Conserved Domains (1) summary
      pfam05769
      Location:2 → 221
      SIKE; SIKE family

    3. XM_038437805.1 → XP_038293733.1  FGFR1 oncogene partner 2 isoform X2

      UniProtKB/TrEMBL
      A0A8C0KJ80, A0A8C0Z3U2, E2QV81
      Related
      ENSCAFP00845035196.1, ENSCAFT00845044910.1
      Conserved Domains (1) summary
      pfam05769
      Location:2 → 183
      SIKE; SIKE family

    RNA

    1. XR_005302762.1 RNA Sequence

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049287.1 Alternate UMICH_Zoey_3.1

      Range
      20680184..20691626 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049768.1 Alternate UNSW_CanFamBas_1.0

      Range
      20702482..20713929 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049248.1 Alternate UU_Cfam_GSD_1.0

      Range
      25865306..25876753
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006609.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      25702442..25713885
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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