GMCL1 germ cell-less 1, spermatogenesis associated [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: GMCL1provided by VGNC
Official Full Name: germ cell-less 1, spermatogenesis associatedprovided by VGNC
Primary source: VGNC:VGNC:111512
See related: Ensembl:ENSCAFG00845026812
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 10

Exon count:: 15

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	10	NC_051814.1 (69492055..69547395)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	10	NC_006592.4 (68359940..68416408)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	10	NC_049231.1 (69770701..69827380)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	10	NC_049270.1 (69210379..69266835)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	10	NC_049751.1 (69473237..69529769)

Chromosome 10 - NC_051814.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in germ cell development	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: germ cell-less protein-like 1

Names: germ cell-less homolog 1; germ cell-less, spermatogenesis associated 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051814.1 Reference ROS_Cfam_1.0

Range

69492055..69547395

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038680839.1 → XP_038536767.1 germ cell-less protein-like 1 isoform X2
XM_038680838.1 → XP_038536766.1 germ cell-less protein-like 1 isoform X1

UniProtKB/TrEMBL

A0A8C0JJX4, A0A8I3PVE4, A0A8P0S901

Related

ENSCAFP00845037126.1, ENSCAFT00845047305.1

Conserved Domains (2) summary

cd18305
Location:98 → 212

BTB_POZ_GCL; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster protein germ cell-less (GCL) and similar proteins

cd18495
Location:213 → 290

BACK_GCL; BACK (BTB and C-terminal Kelch) domain found in Drosophila melanogaster protein germ cell-less (GCL) and similar proteins

RNA

XR_005434039.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

NC_049270.1 Alternate UMICH_Zoey_3.1

Range

69210379..69266835

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038489520.1 → XP_038345448.1 germ cell-less protein-like 1 isoform X2
XM_038489519.1 → XP_038345447.1 germ cell-less protein-like 1 isoform X1

RNA

XR_005332583.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049751.1 Alternate UNSW_CanFamBas_1.0

Range

69473237..69529769

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038615444.1 → XP_038471372.1 germ cell-less protein-like 1 isoform X2
XM_038615443.1 → XP_038471371.1 germ cell-less protein-like 1 isoform X1

Conserved Domains (2) summary

cd18305
Location:98 → 212

BTB_POZ_GCL; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster protein germ cell-less (GCL) and similar proteins

cd18495
Location:213 → 290

BACK_GCL; BACK (BTB and C-terminal Kelch) domain found in Drosophila melanogaster protein germ cell-less (GCL) and similar proteins

RNA

XR_005400657.1 RNA Sequence

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049231.1 Alternate UU_Cfam_GSD_1.0

Range

69770701..69827380

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038551515.1 → XP_038407443.1 germ cell-less protein-like 1 isoform X2
XM_038551514.1 → XP_038407442.1 germ cell-less protein-like 1 isoform X1

UniProtKB/TrEMBL

A0A8C0JJX4, A0A8I3PVE4, A0A8P0S901

Conserved Domains (2) summary

cd18305
Location:98 → 212

BTB_POZ_GCL; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster protein germ cell-less (GCL) and similar proteins

cd18495
Location:213 → 290

BACK_GCL; BACK (BTB and C-terminal Kelch) domain found in Drosophila melanogaster protein germ cell-less (GCL) and similar proteins

RNA

XR_005366232.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006592.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

68359940..68416408

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005626185.3 → XP_005626242.2 germ cell-less protein-like 1 isoform X2
XM_538534.7 → XP_538534.3 germ cell-less protein-like 1 isoform X1

UniProtKB/TrEMBL

A0A8C0JJX4, A0A8I3PVE4, A0A8P0S901

Conserved Domains (2) summary

cd18305
Location:98 → 212

BTB_POZ_GCL; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster protein germ cell-less (GCL) and similar proteins

cd18495
Location:213 → 290

BACK_GCL; BACK (BTB and C-terminal Kelch) domain found in Drosophila melanogaster protein germ cell-less (GCL) and similar proteins